Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a20
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 31 0.21
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.49
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.64
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 29 0.85
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.6
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 3.4
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 27 3.4
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 27 4.5
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 27 4.5
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 7.9
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/86 (26%), Positives = 37/86 (43%)
Frame = -3
Query: 390 ELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFEKSNQGLLISP 211
+L+V+D+ K F + + + FFY L FN +L + N GL ISP
Sbjct: 336 KLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIFNPGYSLFEYATDDNYGLQISP 395
Query: 210 AKNLAFGKSGNSYFMFDCQSYGAPVF 133
++ SYF F + G ++
Sbjct: 396 LSSV--NPDFRSYFRFVGRVMGLAIY 419
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 29.9 bits (64), Expect = 0.49
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -3
Query: 609 DLYSLWGTLHLMDTKFDEDHRGKQYLATCVIALV-MVQACN--ISAWTSNFLDGIVE 448
D+ +W L+L+D DED QYL C+I +V ++ N +S +T +FL I E
Sbjct: 106 DIDCIWYQLNLLDIS-DEDILCLQYLQGCLIPIVSIIYDFNEFLSPFTKSFLSKIGE 161
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.5 bits (63), Expect = 0.64
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 747 PLVDEKMYWLNIEMLPWSRMNSLNDLGFERKT-PKTMWKDWDIEFPGDLYSLWGTLHLM 574
P++D+ +Y L+ S+N G RK P+ W++ ++ F L W T M
Sbjct: 957 PVIDDSIYELSAAS---KYQQSINQKGHHRKEDPQKQWQEKELAFSSTLSEAWRTRRKM 1012
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 29.1 bits (62), Expect = 0.85
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 711 EMLPWSRMNSLNDLGFERKTPKTMWKDWDIEFPGDL 604
E+ W + + D +K P+ ++ W +FP DL
Sbjct: 750 EISSWKKASEYMDTNLGKKCPENAFQGWTWQFPNDL 785
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.6
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Frame = -3
Query: 543 KQYLATCVIALVMVQACN-ISAWTSNFLDGIVEIGDKYH------KSCLNKIGNKPNYEL 385
KQ+LA L + N + S FL I + G+ Y + C+ K N P Y+L
Sbjct: 14 KQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLITEFQLQRCMEKFLNSPLYQL 73
Query: 384 NVNDLDSKFEDMFPY---SFSVKFENIIF 307
+ N + S F D F + ++KF I+F
Sbjct: 74 DENAVLSIFYDCFFFLKEQQTLKFIIIVF 102
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 593 HNEYKSPGNSMSQSFHMVLGVFRSNPKSLREFILDH 700
+NEY+ P SF +L F +REF+ H
Sbjct: 217 NNEYRKPNWKGMASFGTILQEFNGGASVVREFVNQH 252
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 330 RKMNMETYPRIYYPNRLRSIHNWVYFRFYLN--NFCD 434
R+MN YP +YYP + +H Y FY N N CD
Sbjct: 499 RRMNSHRYPFLYYP-EVYILHGG-YKSFYENHKNRCD 533
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 474 SNFLDGIVEIGDKYHKSCLNKIGNKPNY 391
SNFLD V+ +H +C++K+ NY
Sbjct: 23 SNFLDYAVDKYPDFHFTCIDKLSYVSNY 50
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 270 LSKALVYFFEKSNQGLLISPAKNLAFGKSGNSYFMFDCQSYG 145
+S A++YF ++S N K Y FDCQ+ G
Sbjct: 45 ISYAVLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQFDCQNDG 86
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +2
Query: 662 SNPKSLREFILDHGSISIFNQYIFSSTNGRFF------LRLRYGK 778
S+P R ++D GS +N+ +++ RF+ L L YGK
Sbjct: 653 SHPLKARIKLIDFGSSCFYNEKVYTYLQSRFYRAPEIILGLEYGK 697
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,780,986
Number of Sequences: 5004
Number of extensions: 87018
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -