Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a19
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 3.2
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 25 4.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 5.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 5.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 5.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 5.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 5.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 5.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 5.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 5.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 5.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 5.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 5.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 5.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 7.4
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 24 7.4
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 24 7.4
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 24 9.8
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 24 9.8
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 216 IRIQYL*PQ--DKSKGIQDIETWCQARLASNGTRP 118
+ +QY P+ ++ KGI + C+ R SN TRP
Sbjct: 156 LTVQYFCPKCTEEGKGITTWKRKCRLRECSNPTRP 190
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 4.3
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 172 DTFRFILGSEILYSNLINLMMVRVVQPVFFMSFLIADKTISPVLNVLFILAIIRILF 342
DT I +L + + +M+ + P++ SFL+ + V F L I R+LF
Sbjct: 58 DTLDPINNFRVLDGSSASGLMITGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLF 114
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 205 LYSNLINLMMVRVVQPVFFMSFLIADKTISPVLNVL 312
LY++L N + R VQ V + S L ISP+ +L
Sbjct: 766 LYADLPNSVSRRSVQTVLYHSLLTLIWAISPITPLL 801
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 5.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 314 NNTFNTGEIVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDPKINRKVSRTLKRGVRLGLL 135
N G ++ S + L+ N TRTIIK E + P I + L+R G +
Sbjct: 888 NIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKG-I 946
Query: 134 QMERGRYRLNEMSCLARKVNSHE 66
+ + Y N +C K +H+
Sbjct: 947 RKQIQEYVQNCHTCQINKSRNHK 969
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 225 LNDGTSCPASVFHEFLDC 278
L +G SV HEF+DC
Sbjct: 763 LGEGDEKSISVMHEFIDC 780
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/49 (24%), Positives = 20/49 (40%)
Frame = +3
Query: 225 LNDGTSCPASVFHEFLDCRQNDLPRVECIIYFSHYTYTVLFINILEGTF 371
+ND + + D + + PR I+ F H Y+V + G F
Sbjct: 175 MNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQF 223
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 260 KNTGWTTRTIIKFIKLEYSISDP 192
+N GW+ T K IKL Y I P
Sbjct: 1058 QNFGWSLTTYPKQIKLPYEILRP 1080
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 385 KLLQPNVPSRIFMNKTVY 332
K+++P VP+ + KTVY
Sbjct: 212 KIIKPTVPAHLLDEKTVY 229
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 397 EKPSKLLQPNVPSRIFMNKTVYV 329
E P LLQPNV S +TV+V
Sbjct: 162 ETPYDLLQPNVNSSHTPGETVFV 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,446
Number of Sequences: 5004
Number of extensions: 30322
Number of successful extensions: 90
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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