Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a19
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical pr... 38 0.003
AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1 ... 38 0.003
X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1 prot... 38 0.003
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 30 0.52
Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 26 8.5
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 26 8.5
AC025721-12|AAK29899.1| 278|Caenorhabditis elegans Hypothetical... 26 8.5
>Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical
protein M163.3 protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.003
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = -3
Query: 290 IVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDP--KINRKVSRTLKRGV-RLGLLQM--- 129
++ AIK+L G + + I+KFI Y + D +IN + + LKRGV L+Q
Sbjct: 44 MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103
Query: 128 -ERGRYRLNEMSCLARK 81
GR+R+ E + A+K
Sbjct: 104 GANGRFRVPEKAAAAKK 120
>AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1
protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.003
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = -3
Query: 290 IVLSAIKKLMKNTGWTTRTIIKFIKLEYSISDP--KINRKVSRTLKRGV-RLGLLQM--- 129
++ AIK+L G + + I+KFI Y + D +IN + + LKRGV L+Q
Sbjct: 44 MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103
Query: 128 -ERGRYRLNEMSCLARK 81
GR+R+ E + A+K
Sbjct: 104 GANGRFRVPEKAAAAKK 120
>X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1
protein.
Length = 208
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = -3
Query: 287 VLSAIKKLMKNTGWTTRTIIKFIKLEYSISDP--KINRKVSRTLKRGVRLGLLQMER--- 123
+ AIK+L G + + I+KFI Y + D +IN + LKRGV L R
Sbjct: 45 IKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHHRQALKRGVTSKALVQARGSG 104
Query: 122 --GRYRLNEMSCLARK 81
GR+R+ E + A+K
Sbjct: 105 ANGRFRVPEKAAAAKK 120
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 30.3 bits (65), Expect = 0.52
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = -3
Query: 317 INNTFNTGEIVLSAIKKLMK-NTGWTTRTIIKFIKLEYSISDPKIN--RKVSRTLKRGVR 147
+N T + GE V+S LM N+ + R+ IKF K EY ++ K+N V+ T + G +
Sbjct: 398 LNVTASDGENVVSTALHLMTANSEESCRSPIKFEKFEYKMTIGKLNVLGVVNATSRTGTK 457
Query: 146 LGLLQM 129
+ + M
Sbjct: 458 ITYILM 463
>Z81521-5|CAE17802.1| 657|Caenorhabditis elegans Hypothetical
protein F32A11.7 protein.
Length = 657
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 227 KFIKLEYSISDPKINRKVSRTLK 159
KF+KL S+S P+I+R + T+K
Sbjct: 440 KFLKLAKSMSRPQIDRAIMGTIK 462
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 174 YLSIYLGVRD-TVF*FNKLNDGTSCPASVFHEFLDCRQNDLPRVECII 314
+LS + D VF +KL+ G P F+ F+D R PRV I+
Sbjct: 2059 FLSPFFVANDHIVFASDKLDFGNILPK--FNNFVDLRPTGFPRVRAIV 2104
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 174 YLSIYLGVRD-TVF*FNKLNDGTSCPASVFHEFLDCRQNDLPRVECII 314
+LS + D VF +KL+ G P F+ F+D R PRV I+
Sbjct: 2059 FLSPFFVANDHIVFASDKLDFGNILPK--FNNFVDLRPTGFPRVRAIV 2104
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 174 YLSIYLGVRD-TVF*FNKLNDGTSCPASVFHEFLDCRQNDLPRVECII 314
+LS + D VF +KL+ G P F+ F+D R PRV I+
Sbjct: 2078 FLSPFFVANDHIVFASDKLDFGNILPK--FNNFVDLRPTGFPRVRAIV 2123
>AC025721-12|AAK29899.1| 278|Caenorhabditis elegans Hypothetical
protein Y48G8AL.13 protein.
Length = 278
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 202 ILYSNLINLMMVRVVQPVFFMSFLIADKTISPVLNVLFILAIIRILFY 345
++ +N+I L + R + + + +LIA P+L LF++ + L Y
Sbjct: 168 LINANMICLFLFRHLPVCYLLFYLIAQDVKVPILLKLFLVGGLTFLEY 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,284
Number of Sequences: 27780
Number of extensions: 167075
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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