Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a16
         (681 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2045|AAN12245.1|  140|Drosophila melanogaster CG7283-PC...   193   2e-49
BT014654-1|AAT27278.1|  217|Drosophila melanogaster RE06042p pro...   190   2e-48
BT001825-1|AAN71580.1|  155|Drosophila melanogaster RH43519p pro...   190   2e-48
BT001758-1|AAN71513.1|  150|Drosophila melanogaster RH06366p pro...   190   2e-48
AE014296-2043|AAF50002.2|  217|Drosophila melanogaster CG7283-PA...   190   2e-48
AY113239-1|AAM29244.1|  216|Drosophila melanogaster AT11516p pro...   136   3e-32
AE014297-1926|AAF55120.1|  216|Drosophila melanogaster CG3843-PA...   136   3e-32
AE014296-2044|AAN12244.1|   57|Drosophila melanogaster CG7283-PB...    95   8e-20
AY069795-1|AAL39940.1|  681|Drosophila melanogaster SD03546p pro...    33   0.27 
AE014134-1531|AAF52687.1|  681|Drosophila melanogaster CG13096-P...    33   0.27 
AY051627-1|AAK93051.1|  517|Drosophila melanogaster GH27756p pro...    29   4.5  
AE014298-2517|AAF48693.1|  517|Drosophila melanogaster CG4955-PA...    29   4.5  

>AE014296-2045|AAN12245.1|  140|Drosophila melanogaster CG7283-PC,
           isoform C protein.
          Length = 140

 Score =  193 bits (471), Expect = 2e-49
 Identities = 96/124 (77%), Positives = 105/124 (84%)
 Frame = -2

Query: 380 WMLRL*KN*IRTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESM 201
           W LR  ++  + K L +   K +DAFLASESLIKQIPRLLGPGLNKAGKFP LLSHQESM
Sbjct: 8   WRLRRRRSLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESM 67

Query: 200 TQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSL 21
             KI+EVK TIKFQMKKVLCLSVAVGHV M  DELAQNV+LSINFLVSLLKK+WQNVRSL
Sbjct: 68  IGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSL 127

Query: 20  HMKS 9
           H+KS
Sbjct: 128 HVKS 131


>BT014654-1|AAT27278.1|  217|Drosophila melanogaster RE06042p
           protein.
          Length = 217

 Score =  190 bits (462), Expect = 2e-48
 Identities = 93/114 (81%), Positives = 100/114 (87%)
 Frame = -2

Query: 350 RTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGT 171
           + K L +   K +DAFLASESLIKQIPRLLGPGLNKAGKFP LLSHQESM  KI+EVK T
Sbjct: 95  KNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKST 154

Query: 170 IKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 9
           IKFQMKKVLCLSVAVGHV M  DELAQNV+LSINFLVSLLKK+WQNVRSLH+KS
Sbjct: 155 IKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKS 208



 Score =  154 bits (374), Expect = 9e-38
 Identities = 72/88 (81%), Positives = 79/88 (89%)
 Frame = -1

Query: 633 MSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 454
           M+SKVSRDTLYE VN +L++S  KKR FLETVELQIGLKNYDPQKDKRFSGTVKLK+IPR
Sbjct: 1   MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPR 60

Query: 453 PKMQVCVLGDQQHCDEAKTLNVPCMDAE 370
           PKM+VC+LGDQQHCDEAK  NV  MDAE
Sbjct: 61  PKMKVCILGDQQHCDEAKANNVDFMDAE 88


>BT001825-1|AAN71580.1|  155|Drosophila melanogaster RH43519p
           protein.
          Length = 155

 Score =  190 bits (462), Expect = 2e-48
 Identities = 93/114 (81%), Positives = 100/114 (87%)
 Frame = -2

Query: 350 RTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGT 171
           + K L +   K +DAFLASESLIKQIPRLLGPGLNKAGKFP LLSHQESM  KI+EVK T
Sbjct: 33  KNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKST 92

Query: 170 IKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 9
           IKFQMKKVLCLSVAVGHV M  DELAQNV+LSINFLVSLLKK+WQNVRSLH+KS
Sbjct: 93  IKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKS 146



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -1

Query: 447 MQVCVLGDQQHCDEAKTLNVPCMDAE 370
           M+VC+LGDQQHCDEAK  NV  MDAE
Sbjct: 1   MKVCILGDQQHCDEAKANNVDFMDAE 26


>BT001758-1|AAN71513.1|  150|Drosophila melanogaster RH06366p
           protein.
          Length = 150

 Score =  190 bits (462), Expect = 2e-48
 Identities = 93/114 (81%), Positives = 100/114 (87%)
 Frame = -2

Query: 350 RTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGT 171
           + K L +   K +DAFLASESLIKQIPRLLGPGLNKAGKFP LLSHQESM  KI+EVK T
Sbjct: 28  KNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKST 87

Query: 170 IKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 9
           IKFQMKKVLCLSVAVGHV M  DELAQNV+LSINFLVSLLKK+WQNVRSLH+KS
Sbjct: 88  IKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKS 141



 Score = 39.5 bits (88), Expect = 0.004
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = -1

Query: 633 MSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYD 508
           M+SKVSRDTLYE VN +L++S  KK N  + +  ++  K+YD
Sbjct: 1   MASKVSRDTLYEGVNGLLEASAKKKLNKNKKLVKKLA-KSYD 41


>AE014296-2043|AAF50002.2|  217|Drosophila melanogaster CG7283-PA,
           isoform A protein.
          Length = 217

 Score =  190 bits (462), Expect = 2e-48
 Identities = 93/114 (81%), Positives = 100/114 (87%)
 Frame = -2

Query: 350 RTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGT 171
           + K L +   K +DAFLASESLIKQIPRLLGPGLNKAGKFP LLSHQESM  KI+EVK T
Sbjct: 95  KNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKST 154

Query: 170 IKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 9
           IKFQMKKVLCLSVAVGHV M  DELAQNV+LSINFLVSLLKK+WQNVRSLH+KS
Sbjct: 155 IKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKS 208



 Score =  154 bits (374), Expect = 9e-38
 Identities = 72/88 (81%), Positives = 79/88 (89%)
 Frame = -1

Query: 633 MSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 454
           M+SKVSRDTLYE VN +L++S  KKR FLETVELQIGLKNYDPQKDKRFSGTVKLK+IPR
Sbjct: 1   MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPR 60

Query: 453 PKMQVCVLGDQQHCDEAKTLNVPCMDAE 370
           PKM+VC+LGDQQHCDEAK  NV  MDAE
Sbjct: 61  PKMKVCILGDQQHCDEAKANNVDFMDAE 88


>AY113239-1|AAM29244.1|  216|Drosophila melanogaster AT11516p
           protein.
          Length = 216

 Score =  136 bits (329), Expect = 3e-32
 Identities = 69/110 (62%), Positives = 85/110 (77%)
 Frame = -2

Query: 338 LSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 159
           L++   K +D FLASES+IKQIPRLLGPGL  AGKF   L+  ESM+ KI ++  T K  
Sbjct: 99  LTKKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKI-KILSTKKKH 157

Query: 158 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 9
           MK++ CLSV VGHV M P+ELA+N+ +SINFLVSLLK +WQNVRSLH+KS
Sbjct: 158 MKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNVRSLHIKS 207



 Score =  104 bits (250), Expect = 1e-22
 Identities = 48/88 (54%), Positives = 65/88 (73%)
 Frame = -1

Query: 633 MSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 454
           M SKVSRDT+Y  V  +L +S+ K  + LETVELQIGL++YDP K KRF G+V L ++  
Sbjct: 1   MVSKVSRDTIYVAVKNILLNSQAKGPDCLETVELQIGLRDYDPDKCKRFHGSVLLHHLAV 60

Query: 453 PKMQVCVLGDQQHCDEAKTLNVPCMDAE 370
           P+++VCV GDQ+HC +AK + V C+D E
Sbjct: 61  PQLKVCVFGDQEHCYKAKAIGVDCLDVE 88


>AE014297-1926|AAF55120.1|  216|Drosophila melanogaster CG3843-PA
           protein.
          Length = 216

 Score =  136 bits (329), Expect = 3e-32
 Identities = 69/110 (62%), Positives = 85/110 (77%)
 Frame = -2

Query: 338 LSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 159
           L++   K +D FLASES+IKQIPRLLGPGL  AGKF   L+  ESM+ KI ++  T K  
Sbjct: 99  LTKKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKI-KILSTKKKH 157

Query: 158 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 9
           MK++ CLSV VGHV M P+ELA+N+ +SINFLVSLLK +WQNVRSLH+KS
Sbjct: 158 MKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNVRSLHIKS 207



 Score =  104 bits (250), Expect = 1e-22
 Identities = 48/88 (54%), Positives = 65/88 (73%)
 Frame = -1

Query: 633 MSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 454
           M SKVSRDT+Y  V  +L +S+ K  + LETVELQIGL++YDP K KRF G+V L ++  
Sbjct: 1   MVSKVSRDTIYVAVKNILLNSQAKGPDCLETVELQIGLRDYDPDKCKRFHGSVLLHHLAV 60

Query: 453 PKMQVCVLGDQQHCDEAKTLNVPCMDAE 370
           P+++VCV GDQ+HC +AK + V C+D E
Sbjct: 61  PQLKVCVFGDQEHCYKAKAIGVDCLDVE 88


>AE014296-2044|AAN12244.1|   57|Drosophila melanogaster CG7283-PB,
           isoform B protein.
          Length = 57

 Score = 95.1 bits (226), Expect = 8e-20
 Identities = 45/54 (83%), Positives = 49/54 (90%)
 Frame = -1

Query: 633 MSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVK 472
           M+SKVSRDTLYE VN +L++S  KKR FLETVELQIGLKNYDPQKDKRFSGTVK
Sbjct: 1   MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFSGTVK 54


>AY069795-1|AAL39940.1|  681|Drosophila melanogaster SD03546p
           protein.
          Length = 681

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = -2

Query: 332 RNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLL---SHQESMTQKIDEVKGTIKF 162
           R +   +D  L    L  Q    LG    K       L      + + Q++        F
Sbjct: 389 RKFLNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAF 448

Query: 161 -QMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 12
            Q+ K   ++V VG+ ++T ++LA+N+ L I  L  +      N+RS+++K
Sbjct: 449 RQLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLK 499


>AE014134-1531|AAF52687.1|  681|Drosophila melanogaster CG13096-PA
           protein.
          Length = 681

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = -2

Query: 332 RNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLL---SHQESMTQKIDEVKGTIKF 162
           R +   +D  L    L  Q    LG    K       L      + + Q++        F
Sbjct: 389 RKFLNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAF 448

Query: 161 -QMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 12
            Q+ K   ++V VG+ ++T ++LA+N+ L I  L  +      N+RS+++K
Sbjct: 449 RQLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLK 499


>AY051627-1|AAK93051.1|  517|Drosophila melanogaster GH27756p
           protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 313 NFFGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTMLLVSKNAN 441
           NFF  FL ++  ++ FF   +I  W   G+ +V +L+  KNA+
Sbjct: 342 NFFITFLLEVLGVLVFFAICTITFWITLGYHVVQLLVDLKNAD 384


>AE014298-2517|AAF48693.1|  517|Drosophila melanogaster CG4955-PA
           protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 313 NFFGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTMLLVSKNAN 441
           NFF  FL ++  ++ FF   +I  W   G+ +V +L+  KNA+
Sbjct: 342 NFFITFLLEVLGVLVFFAICTITFWITLGYHVVQLLVDLKNAD 384


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,564,618
Number of Sequences: 53049
Number of extensions: 665479
Number of successful extensions: 1708
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)