Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a13
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   2.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   3.5  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   4.6  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    27   4.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.6  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   8.1  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    26   8.1  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 119 GPDALPTSPGATADRDATPNPPRSYSA-ADLQGSSLRSPHCRNPFRVRRLHTTRAMRRAS 295
           G +++P  PG T     TP+   + SA A  Q +  R+P  R+ F +      RA R AS
Sbjct: 400 GQESIPLQPGGTGYTGVTPSHAANGSALAAPQATPFRTP--RDTFSINAA-AERAGRLAS 456

Query: 296 E 298
           E
Sbjct: 457 E 457


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 578 LFRCSEVILLDPQTTAVVSANT 643
           LFRC +  L DPQT   + AN+
Sbjct: 216 LFRCVQTELSDPQTAQTLEANS 237


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 856 TQTIPDHPRGV--AAEASASGSCAHRHVSSTLSRTEIPQWTYGCLISGRVPSSLF 698
           + ++P    GV  AA +S+ G  +  H+SS      +P W+ G  ++G   +S +
Sbjct: 93  SSSVPSKMLGVSLAAISSSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSY 147


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 119 GPDALPTSPGATADRDATPNPPRSYSAADLQGSSLRSPH 235
           GPD   + P  T +   TP PP+  SA     + +  PH
Sbjct: 233 GPDHKVSQPSETENFLPTPEPPKIASANAGSSNEISIPH 271


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 834 QEVLLQKPPPRDPVLIAMFPPPS 766
           Q++LL+ PPP  P +I   P P+
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPA 747


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 748 EEFPSD*GWRK-HGDEHRIPRRRLLQQHLL 834
           E+   D GW+  HGD  R PRR +L   LL
Sbjct: 306 EDVQEDFGWKLVHGDVFRPPRRPMLFSILL 335


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 867 SNDSPKRFPTIQEVLLQKPPPRDPVLIAMFPPPSVGRKFLN 745
           +NDSP    ++ E L  +     P  +   PPP +GR+ LN
Sbjct: 662 ANDSPNSSESL-ESLNNQSYSSSPYSVFSHPPPYMGRQSLN 701


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 566 YEVRYRDKCAEVSSS 522
           Y VRYR KCA V++S
Sbjct: 365 YPVRYRSKCAAVATS 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,577,615
Number of Sequences: 5004
Number of extensions: 73052
Number of successful extensions: 261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)