Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a13
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 40 0.003
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 38 0.011
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 38 0.014
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 37 0.018
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 36 0.032
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111... 36 0.056
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 35 0.074
02_02_0221 + 8006708-8006950,8007049-8007252,8007559-8007750,800... 35 0.098
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 31 1.2
04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778... 30 2.1
05_06_0226 + 26561673-26562908 30 2.8
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306... 30 2.8
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 30 2.8
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 30 2.8
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666... 30 2.8
09_02_0606 - 11173521-11173922 29 6.5
09_02_0600 - 11096646-11097047 29 6.5
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 6.5
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 28 8.5
08_02_1490 + 27495155-27495334,27495437-27495746,27495865-274959... 28 8.5
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 28 8.5
01_07_0381 - 43186467-43187219 28 8.5
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 39.5 bits (88), Expect = 0.003
Identities = 32/122 (26%), Positives = 51/122 (41%)
Frame = -1
Query: 506 QLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTELKSPXXXXXXXXXXGPLERAVLYKV 327
Q LA V + M G + + + + + L T + S RA+L+KV
Sbjct: 292 QKLAGLVARHMGGTFFDSEGMLVKYQKMMRYLRTSIGSVVVPLGQLKIGLARHRALLFKV 351
Query: 326 LSDRVGLPCALKRVASHAWCEVALPEMDSDNEETEVSYPAGLLRCNYVVDLVSHPGRLWP 147
L+D +G+PC L + + + D V + G ++VDLV+ PG L P
Sbjct: 352 LADNIGIPCRLLKGRQYTGSD--------DGALNIVKFDDGR---EFIVDLVADPGTLIP 400
Query: 146 LD 141
D
Sbjct: 401 SD 402
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 37.9 bits (84), Expect = 0.011
Identities = 31/124 (25%), Positives = 54/124 (43%)
Frame = -1
Query: 506 QLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTELKSPXXXXXXXXXXGPLERAVLYKV 327
Q +AE V M G ++ + + +L T L + RA+L+K+
Sbjct: 231 QRIAELVTDHMGGPVKDANDMLTRWLEKSTELRTSLHTSLLPIGCIKIGLSRHRALLFKI 290
Query: 326 LSDRVGLPCALKRVASHAWCEVALPEMDSDNEETEVSYPAGLLRCNYVVDLVSHPGRLWP 147
L+D VG+PC L + +++ D D+ + + ++VDL++ PG L P
Sbjct: 291 LADSVGIPCKLVKGSNYTG--------DDDDAINIIK----MNEREFLVDLMAAPGTLIP 338
Query: 146 LDSL 135
D L
Sbjct: 339 SDVL 342
>09_06_0320 -
22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 37.5 bits (83), Expect = 0.014
Identities = 34/139 (24%), Positives = 58/139 (41%)
Frame = -1
Query: 554 YRDKCAEVSSSLKQRAQLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTELKSPXXXXX 375
Y S+ +K LA+ V +M G T + +P + + + S
Sbjct: 205 YASSFLSSSADMKDVINQLAKLVSSRMGGTTSNEESFLPRWKECSDAIKSSTGSIVLHLG 264
Query: 374 XXXXXGPLERAVLYKVLSDRVGLPCALKRVASHAWCEVALPEMDSDNEETEVSYPAGLLR 195
R++L+K+L+D+V +PC + V +C+ ++ T GL R
Sbjct: 265 KLPIGFCKHRSLLFKMLADKVNVPCRV--VKGCKYCK--------SDDATSCLVRFGLER 314
Query: 194 CNYVVDLVSHPGRLWPLDS 138
Y+VDL+ PG+L DS
Sbjct: 315 -EYLVDLIGDPGQLSDPDS 332
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 37.1 bits (82), Expect = 0.018
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
Frame = -1
Query: 560 VRYRDKCAE-VSSSLKQRAQLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTELKSPXX 384
V R K E V +L QR LA V M G + + + + + L ++S
Sbjct: 248 VEVRSKTPEFVGHNLVQR---LATLVSDYMGGPVIDPESFLSKYQNVSSSLRASIRSAVM 304
Query: 383 XXXXXXXXGPLERAVLYKVLSDRVGLPCALKRVASHAWCEVALPEMDSDNEETEVSYPAG 204
RA+L+KVL+D + +PC L + + + D + V + G
Sbjct: 305 PLGELTIGLARHRALLFKVLADSLAVPCRLVKGRQYTGSD--------DGALSIVKFNDG 356
Query: 203 LLRCNYVVDLVSHPGRLWPLD 141
Y+VDL+S PG L P D
Sbjct: 357 R---EYIVDLMSDPGTLIPSD 374
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 36.3 bits (80), Expect = 0.032
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 3/150 (2%)
Frame = -1
Query: 581 IEDAHYEVRYRDKCAEVSSSLKQRAQLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTE 402
+E + +D+ + + Q +A VV M G + D + L +
Sbjct: 209 LEGRALAIAAQDRAEHGGVASPELVQKIANLVVDAMGGPVDDADEMNREWGVKSRALCLQ 268
Query: 401 LKSPXXXXXXXXXXGPLERAVLYKVLSDRVGLPCALKRVASHAWCE---VALPEMDSDNE 231
S R++L+KVL+DRV LPC L + + + + L ++D D+
Sbjct: 269 RNSIVLPLGLLRIGLSRHRSLLFKVLADRVNLPCKLVKGIYYTGTDEGAINLVKIDFDSV 328
Query: 230 ETEVSYPAGLLRCNYVVDLVSHPGRLWPLD 141
E Y+VDL+ PG L P D
Sbjct: 329 E-------------YIVDLMGAPGTLIPSD 345
>04_04_1115 +
31008213-31008707,31009385-31009689,31010848-31011108,
31011193-31011401,31011490-31011783,31011861-31011901,
31011987-31012055,31012164-31012264,31012351-31012435,
31012539-31012637,31012731-31012799,31012909-31013040,
31013128-31013222,31013340-31013421
Length = 778
Score = 35.5 bits (78), Expect = 0.056
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = -1
Query: 347 RAVLYKVLSDRVGLPCALKRVASHAWCEVALPEMDSDNEETEVSYPAGLLRCNYVVDLVS 168
RA+L+K L+D +GLPC + + + + P S ++ +R YVVDLV
Sbjct: 310 RAILFKSLADFIGLPCRIAQGCKYC----SAPHRSSC--LVKIDNERRFVR-EYVVDLVV 362
Query: 167 HPGRLWPLDS 138
PGRL DS
Sbjct: 363 EPGRLSSPDS 372
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 35.1 bits (77), Expect = 0.074
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = -1
Query: 347 RAVLYKVLSDRVGLPCALKRVASHAWCEVALPEMDSDNEETEVSYPAGLLRCNYVVDLVS 168
RA+L+K+L+D VG+PC L + + + E + N E E ++VD+++
Sbjct: 262 RALLFKILADSVGIPCKLVKGSHYTGVEDDAINIVKMNNERE-----------FLVDVMA 310
Query: 167 HPGRLWPLD 141
PG L P D
Sbjct: 311 APGTLIPAD 319
>02_02_0221 +
8006708-8006950,8007049-8007252,8007559-8007750,
8007860-8008098,8009756-8009851,8009966-8010058,
8011481-8011561,8012432-8012518,8012904-8013033,
8013223-8013528,8013749-8013772,8014162-8014240,
8014572-8014708,8015427-8015477
Length = 653
Score = 34.7 bits (76), Expect = 0.098
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 347 RAVLYKVLSDRVGLPCALKRVASHAWCEVALPE---MDSDNEETEVSYPAGLLRCNYVVD 177
RA+L+KVL+D VG+ C L V +P + D+ +S L ++VD
Sbjct: 194 RAILFKVLADAVGMDCKLL---------VGIPNEEYHEYDDSSKHMSVVVMLKSVEFLVD 244
Query: 176 LVSHPGRLWPLDS 138
L+ PG+L P S
Sbjct: 245 LMRFPGQLVPFSS 257
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 417 GEV*LNAGHRAVSLLGEAAHLLDHKLREQLSALLQRR 527
GEV AGH +++GE H + +R+ L +QRR
Sbjct: 211 GEVIATAGHEEATVVGEIDHSMIQTIRDNLPLEMQRR 247
>04_04_1327 +
32677408-32677460,32677563-32677658,32677737-32677811,
32678446-32678520,32678615-32678837,32678931-32679174,
32679740-32680197,32680276-32680470,32680660-32681361
Length = 706
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -2
Query: 874 YVLKRLTQ----TIPDHPRGVAAEASASGSCAHRHVSSTLSRTEI 752
Y+LKR T+ TIP H G + +AS S ++RHV E+
Sbjct: 487 YILKRWTKDARDTIPPHLHGYKDDVNASQSRSYRHVMLNRKTVEV 531
>05_06_0226 + 26561673-26562908
Length = 411
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 781 VSSTLSRTEIPQWTYGCLISGRVPSSLFHHQAVCLH 674
V++TLSR Q GC+++G + S L HHQ H
Sbjct: 154 VAATLSRAPTEQ---GCIVAGIINSFLSHHQIAFWH 186
>05_05_0045 +
21830291-21830343,21830446-21830541,21830620-21830694,
21831329-21831403,21831497-21831719,21831813-21832056,
21832621-21832769,21832913-21832944,21832991-21833078,
21833157-21833438,21833542-21834243
Length = 672
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -2
Query: 874 YVLKRLTQ----TIPDHPRGVAAEASASGSCAHRHVSSTLSRTEI 752
Y+LKR T+ TIP H G + AS S ++RHV E+
Sbjct: 453 YILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEV 497
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 862 RLTQTIPDHPRGVAAEASASGS--CAHRHVSSTLSRTEIPQWTYG 734
R + +P HP G AA A A G C+H V T PQW G
Sbjct: 320 RKPKQLPPHPSGAAASAPAPGDRRCSHCGVQKT------PQWRAG 358
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -2
Query: 874 YVLKRLTQ----TIPDHPRGVAAEASASGSCAHRHVSSTLSRTEI 752
Y+LKR T+ TIP H G + AS S ++RHV E+
Sbjct: 516 YILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEV 560
>02_02_0089 -
6668179-6668316,6668386-6668565,6668648-6668729,
6669317-6669405,6669503-6669580,6670502-6670559,
6670727-6670956,6671174-6671318,6671417-6671458,
6671681-6671853
Length = 404
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 290 RVASHAWCEVALPEMDSDNEETEVSYPAGLL 198
+V SH W +V L ++D N +T V Y G +
Sbjct: 362 QVRSHGWTDVLLEQLDVKNADTIVMYGLGTM 392
>09_02_0606 - 11173521-11173922
Length = 133
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 113 CRGPDALPTSPGATADRDAT 172
C+G LPTSP + DRDA+
Sbjct: 75 CKGLHPLPTSPSSEGDRDAS 94
>09_02_0600 - 11096646-11097047
Length = 133
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 113 CRGPDALPTSPGATADRDAT 172
C+G +LPTSP DRDA+
Sbjct: 75 CKGLHSLPTSPSREGDRDAS 94
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 116 RGPDA--LPTSPGATADRDATPNPP 184
+G DA L TSP TA+RDA PN P
Sbjct: 9 KGCDASVLLTSPNNTAERDAAPNNP 33
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 798 DPEAEASAATPLGWSGIVW 854
DP A A P GWSG +W
Sbjct: 60 DPGQTAQLAAPAGWSGRIW 78
>08_02_1490 +
27495155-27495334,27495437-27495746,27495865-27495965,
27496620-27496661,27496763-27496884,27496954-27497062,
27497309-27497362
Length = 305
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 125 DALPTSPGATADRDATPNPPRSYSAADLQGSSLRSPHCRNPF 250
DA + A AD++ TPNPP +AA S+ + R PF
Sbjct: 2 DAAKDTTAAAADQNPTPNPPT--AAAPPDDSAAAAAAGRRPF 41
>06_03_0999 - 26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 28.3 bits (60), Expect = 8.5
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = -3
Query: 873 TSSNDSPKRFPTIQEVLLQKPPPRDPVLIAMFPPPSVGRKFLNGHTDA--------LSAV 718
T S DSP PTIQE L + P + L ++P + +N TD LSA
Sbjct: 915 TPSKDSPTVTPTIQEDLKEGQPENEEGL-PVYPYERLRTSSINPVTDIDVTKRETYLSAA 973
Query: 717 EFQARCFTIKRFVCILP 667
EF+ R K LP
Sbjct: 974 EFRERFGMTKEAFAKLP 990
>01_07_0381 - 43186467-43187219
Length = 250
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 128 ALPTSPGATADRDATPNPPRSYSAA-DLQGSSLRS 229
+LP + A A+ + P PPR+ +AA ++Q S RS
Sbjct: 174 SLPGAAAAAAEVEVAPPPPRALAAASEIQDGSSRS 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,056,696
Number of Sequences: 37544
Number of extensions: 562607
Number of successful extensions: 2446
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2431
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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