Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a13
         (875 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039312-1|AAH39312.1|  872|Homo sapiens armadillo repeat contai...    65   3e-10
AL139815-2|CAH72189.1|  875|Homo sapiens novel protein protein.        65   3e-10
AK098711-1|BAC05389.1|  368|Homo sapiens protein ( Homo sapiens ...    65   3e-10
AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.     33   1.8  

>BC039312-1|AAH39312.1|  872|Homo sapiens armadillo repeat containing
            3 protein.
          Length = 872

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
 Frame = -1

Query: 527  SSLKQRAQLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTELKSPXXXXXXXXXXGPLE 348
            +++K++ + LA++V ++M G   +      S ELH+++L  +LKS               
Sbjct: 738  TNIKEQIEDLAKYVAEKMGGKIPKEKLPDFSWELHISELKFQLKSNVIPIGHVKKGIFYH 797

Query: 347  RAVLYKVLSDRVGLPCALKR-VASHAWCEVALPEMDSDNEETEV-SYPAGLLRCNYVVDL 174
            RA+L+K L+DR+G+ C+L R     AW EV L    +D+ +  +   PA  +   YV+DL
Sbjct: 798  RALLFKALADRIGIGCSLVRGEYGRAWNEVML---QNDSRKGVIGGLPAPEM---YVIDL 851

Query: 173  VSHPGRLWPLDSLEAHRVR 117
            + HPG L  L S EA   R
Sbjct: 852  MFHPGGLMKLRSREADLYR 870


>AL139815-2|CAH72189.1|  875|Homo sapiens novel protein protein.
          Length = 875

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
 Frame = -1

Query: 527  SSLKQRAQLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTELKSPXXXXXXXXXXGPLE 348
            +++K++ + LA++V ++M G   +      S ELH+++L  +LKS               
Sbjct: 741  TNIKEQIEDLAKYVAEKMGGKIPKEKLPDFSWELHISELKFQLKSNVIPIGHVKKGIFYH 800

Query: 347  RAVLYKVLSDRVGLPCALKR-VASHAWCEVALPEMDSDNEETEV-SYPAGLLRCNYVVDL 174
            RA+L+K L+DR+G+ C+L R     AW EV L    +D+ +  +   PA  +   YV+DL
Sbjct: 801  RALLFKALADRIGIGCSLVRGEYGRAWNEVML---QNDSRKGVIGGLPAPEM---YVIDL 854

Query: 173  VSHPGRLWPLDSLEAHRVR 117
            + HPG L  L S EA   R
Sbjct: 855  MFHPGGLMKLRSREADLYR 873


>AK098711-1|BAC05389.1|  368|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25845 fis, clone TST08751. ).
          Length = 368

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
 Frame = -1

Query: 527 SSLKQRAQLLAEFVVQQMSGLTQERDCSMPSVELHLADLMTELKSPXXXXXXXXXXGPLE 348
           +++K++ + LA++V ++M G   +      S ELH+++L  +LKS               
Sbjct: 234 TNIKEQIEDLAKYVAEKMGGKIPKEKLPDFSWELHISELKFQLKSNVIPIGHVKKGIFYH 293

Query: 347 RAVLYKVLSDRVGLPCALKR-VASHAWCEVALPEMDSDNEETEV-SYPAGLLRCNYVVDL 174
           RA+L+K L+DR+G+ C+L R     AW EV L    +D+ +  +   PA  +   YV+DL
Sbjct: 294 RALLFKALADRIGIGCSLVRGEYGRAWNEVML---QNDSRKGVIGGLPAPEM---YVIDL 347

Query: 173 VSHPGRLWPLDSLEAHRVR 117
           + HPG L  L S EA   R
Sbjct: 348 MFHPGGLMKLRSREADLYR 366


>AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.
          Length = 1721

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +2

Query: 86   GNYKA*GK*CRGPDALPTSPGATADRDATPNPPRSYSAADLQGSSLRSPHCRNPFR 253
            G  KA GK  +G  +L   PGAT  RDA  NP R+++  + +GS L S   +   R
Sbjct: 1007 GKKKAKGK-AKG--SLRAEPGATPSRDALFNPSRAFACRE-EGSQLASERLKRATR 1058


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,714,725
Number of Sequences: 237096
Number of extensions: 2967623
Number of successful extensions: 10123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10098
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)