Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a13
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    31   1.4  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical...    29   5.8  
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    29   5.8  

>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 280 RTRGVKSPYPKWIPTMRRPK*ATLQVCCAVTTWWIW 173
           RT  V  P   WI  + +PK A   +    T W IW
Sbjct: 141 RTLSVFFPMSNWIQKLSKPKNAIFMIVVVFTFWTIW 176


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = +2

Query: 587 CSEVILLDPQTTAVVSANTTSN*RHQVGRMQTNRLMVKQRAWNSTADKASVCPLRNFRPT 766
           CS  ++  PQ TAV S+ ++ N  H++  M   R+     + ++    +S+  LR  R  
Sbjct: 26  CSLSMIHHPQLTAVRSSKSSEN-LHRITTMSPQRIQDVDGSPSTRKPSSSIFTLRRSRNK 84

Query: 767 E------GGGNMAMSTGSRGGGFCSNTSW 835
           E      GGG    S  S+ G      SW
Sbjct: 85  EKKYKNNGGGGSTKSPISKNGTNEMTQSW 113


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = +2

Query: 587 CSEVILLDPQTTAVVSANTTSN*RHQVGRMQTNRLMVKQRAWNSTADKASVCPLRNFRPT 766
           CS  ++  PQ TAV S+ ++ N  H++  M   R+     + ++    +S+  LR  R  
Sbjct: 26  CSLSMIHHPQLTAVRSSKSSEN-LHRITTMSPQRIQDVDGSPSTRKPSSSIFTLRRSRNK 84

Query: 767 E------GGGNMAMSTGSRGGGFCSNTSW 835
           E      GGG    S  S+ G      SW
Sbjct: 85  EKKYKNNGGGGSTKSPISKNGTNEMTQSW 113


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 870 SSNDSPKRFPTIQEVLLQKPPPRDPVLIAMFPPPSVGRKFLNGHTDALSAVEFQARC-FT 694
           SS+  P   PT Q     +PP  DP+ ++MF     G  F NG    ++     + C FT
Sbjct: 136 SSSTKPIAIPTKQ----CRPPETDPMQMSMFSDMMDGSMFSNGSWSDIADSMITSNCTFT 191

Query: 693 IKR 685
           +++
Sbjct: 192 VRK 194


>AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical
           protein T23B12.2 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 614 GDPAKSLHYIEIEDAHYEVRYRDKCAEVSSSLKQRAQLLAEFVVQQMSGL 465
           GDP   +   E  +  Y V + D C E+S  L +  Q L    V  + GL
Sbjct: 186 GDPKYWIDLCEARNYGYSVLFVDDCDEISGGLAEAQQALPWLNVMPVYGL 235


>AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical
           protein D1007.5b protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 485 PQTPRATERAASATNSLQRIYPDTSLHNEHLLFRCS 592
           P  P +  RA+  T S+  I+PD       L F C+
Sbjct: 15  PSVPASIPRASGVTLSVHPIWPDIQFTQGELFFECT 50


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 485 PQTPRATERAASATNSLQRIYPDTSLHNEHLLFRCS 592
           P  P +  RA+  T S+  I+PD       L F C+
Sbjct: 15  PSVPASIPRASGVTLSVHPIWPDIQFTQGELFFECT 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,211,199
Number of Sequences: 27780
Number of extensions: 433614
Number of successful extensions: 1594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)