Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a12
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 40 5e-04
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 40 6e-04
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 32 0.095
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 30 0.38
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 30 0.51
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 29 1.2
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 28 2.0
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 28 2.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 28 2.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 2.0
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 3.6
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 27 4.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.7
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 6.2
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 6.2
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 6.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.2
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 6.2
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 26 6.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 8.2
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 8.2
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 8.2
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 26 8.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 8.2
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 8.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 8.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.2
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 796 GVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPY--NPWLAVVGTEAEMRLCDV 623
G+F + S D L++++V +++ + W P + +A + +RLCD+
Sbjct: 117 GIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIASHCLIATAYRSSSIRLCDM 176
Query: 622 ACGREVHVDGLKG-TGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRCS 479
G H L G TG V + +A+G ++G ++WD+ + S
Sbjct: 177 QSGSYTH--SLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVS 223
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 39.5 bits (88), Expect = 6e-04
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = -2
Query: 835 DLHFGCYVHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYH-VSCVGWLPYNPWLAV 659
D+ FG + H F T S D ++++ PL++ + V CV + P + ++
Sbjct: 426 DVAFGPFGHY-----FATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLT 480
Query: 658 VGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 491
++ RL DV G V V T V +A+ G +A+ DSEG + +WD+
Sbjct: 481 GSSDKTCRLWDVHRGHSVRVFN-GHTQPVTAVAIAP-DGHTMASADSEGLIHLWDI 534
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.3 bits (70), Expect = 0.095
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 703 VSCVGWLPYNPWLAVVGTEAEMRLCDVACGREVHVDGLKGTGG-VCKLAVNQIGGCRVAA 527
V V + P + LA G + + DV G +V L+G + +A N +G ++A
Sbjct: 190 VRSVAFSPGSTLLAAAGDSKMITIYDVLSGDQV--GQLRGHAAWIFAVAFNPVGDLLLSA 247
Query: 526 GDSEGCVKIWDL 491
D EG +KIWD+
Sbjct: 248 -DVEGKIKIWDI 258
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -2
Query: 778 SIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRL 632
S D ++++N+K+ S ++ I + + V +GW+ P ++ T E L
Sbjct: 208 SRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWVNGQPEEKILYTAGEGNL 256
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 29.9 bits (64), Expect = 0.51
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +3
Query: 507 TQPSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRISAS 650
TQP T+QPP F Q P VP P+T P A +ISAS
Sbjct: 348 TQPVNPNGFTVQPPATFMQQPQGPFVP--PNTTFESPFANVTSKISAS 393
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = -2
Query: 796 GVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPY-NPWLAVVGTEAEMRLCDVA 620
G+ ++ S DS ++I++++ + L S H+ V L + L + ++ D+
Sbjct: 405 GLVLSGSDDSTIKIWSLETNTCLHTFSA--HIGPVQSLALADSRLFSCSLDGTIKQWDIE 462
Query: 619 CGREVHVDGLKG-TGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRCSHT 473
+ VH L G GV ++A + + R+ +G +G VK+W+ C HT
Sbjct: 463 KKKCVHT--LFGHIEGVWEIAADHL---RLISGAHDGVVKVWEACECVHT 507
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -2
Query: 712 DYHVSCVGWLPYNPWLAVVGTEAEMRLC--DVACGREVHVDGLKGTGGVCKLAVNQIGGC 539
D +SC+ W P N L V G+ + + + R VH VC L N G
Sbjct: 244 DGDISCMAWSPINWTLLVGGSTGNIYVYRRTKSMMRRVHTIKKVHQEQVCGLEWN-YDGT 302
Query: 538 RVAAGDSEGCVKIWDL 491
+ A+G ++ V I+D+
Sbjct: 303 QFASGGNDNLVCIFDI 318
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -2
Query: 793 VFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTE 647
V + +D + IY+++ +SPL + + + W P + V G+E
Sbjct: 202 VLASAGMDRSIVIYDLRTSSPLTKLITKLRTNSISWNPMEAFNFVAGSE 250
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -2
Query: 820 CYVHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNP 671
C+ +D V ++ S D ++RI++ +++ L + +L HV CV ++ YNP
Sbjct: 434 CFGGKDDTFV-LSGSEDDKIRIWH-RESGKL-LATLSGHVKCVNYVAYNP 480
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 513 PSESPAATLQPPI*FTASLQTPPVPLSPSTCTSL--PQATSHRRISASVPTTASQGLYGS 686
P+ P+A + +AS +T ++ + TS+ P +TSH + +VP T S +
Sbjct: 36 PTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTT 95
Query: 687 QP 692
P
Sbjct: 96 VP 97
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -2
Query: 544 GCRVAAGDSEGCVKIWDL--PRCSH 476
G +V G +G +KIWDL CSH
Sbjct: 189 GTQVFIGGIDGAIKIWDLRNNHCSH 213
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 544 GCRVAAGDSEGCVKIWD 494
G VA+GD++G V+IWD
Sbjct: 70 GYYVASGDNQGNVRIWD 86
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 516 SESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTAS 668
S S + TL A L TP SPS ++PQ++S S S P S
Sbjct: 3777 SSSISLTLSSSSIRDAELPTPSRMTSPSLSETIPQSSSISEASTSNPNILS 3827
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 510 QPSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTASQGLYGS 686
Q ++P T+Q + + PVP + T L Q+T HR++ P+T S Y S
Sbjct: 100 QTPKTPKRTIQIVTPKSLNRTCNPVPFA----TRLLQSTPHRQLFPPTPSTPSTPSYNS 154
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +3
Query: 600 TCTSLPQATSHRRI--SASVPTTASQGLYGSQP 692
TC SLP A H+R P T G Y P
Sbjct: 211 TCRSLPPAQDHKRAFDGDKGPNTGGMGCYAPTP 243
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 682 PYNPWLAVVGTEAEMRLCDVACGREVHVDGLKG-TGGVCKLAVNQIGGCRVAAGDSEGCV 506
P +LA G +RL D+ ++ + +G T V +A + G +A +G V
Sbjct: 50 PDKKFLAAAGNP-HVRLYDINTSSQMPLMTFEGHTNNVTAIAFH-CDGKWLATSSEDGTV 107
Query: 505 KIWDL 491
K+WD+
Sbjct: 108 KVWDM 112
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 558 TASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTAS 668
T TPP P+T ++LP A+ +PT S
Sbjct: 266 TLGYNTPPFGYPPTTSSALPNASGSSSSFFGLPTAVS 302
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 790 FITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYN 674
F+T ++ LR+Y V +P+ +S + S V L YN
Sbjct: 360 FVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVA-LRYN 397
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 532 AAGDSEGCVKIWD 494
A GD GCV +WD
Sbjct: 121 ATGDDNGCVSVWD 133
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 573 TPPVPLSPSTCTSLPQATSHRRISASVPTTASQGLYG 683
T P PL+PST P + S IS S P +A +G
Sbjct: 369 TSPPPLTPSTSRDYPFSAS--TISPSTPFSAYSSSHG 403
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 498 QIFTQPSESPAATLQPPI*FTASLQTPPVPLSPSTC-TSLPQA 623
++ +P+E+PA+T P TA+ P +P+ TS P A
Sbjct: 96 EVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAA 138
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 516 SESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTAS 668
S+ + T PP A L P + S+ +PQ T H +S S P + S
Sbjct: 293 SKHRSVTFSPPD--LAILFDPSITSPSSSVGQIPQPTDHSALSPSKPMSIS 341
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 51 IYLXYINKKTIKLYSK*TYVPYSNKKLLKNSYFLHRL 161
I L Y NK L K + YS+K+ LK S F+H+L
Sbjct: 350 IMLHYHNKP---LEHKAFFQKYSSKRFLKASIFVHQL 383
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 534 TLQPP--I*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTASQGLYGSQP 692
T+ PP + +A PP S S + P A++ A P + YG+ P
Sbjct: 46 TIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAP 100
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 79 PSNYIL-NKHMYPIRIKNSLKTPISYTDYLCPSIDRRLLGKTN 204
PS IL NKH Y +R + ++Y YLC + + K N
Sbjct: 275 PSKLILKNKHHYILRSLITHSGSVTYGHYLCYRLQDDIWWKAN 317
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +3
Query: 459 KSSPGVCEQRGRSQIFTQPSESP--AATLQPPI*FTASLQTPPVPLSPSTCTSLP 617
+ P + R S P P +A PP+ + TPPVP PS S P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 507 TQPSESPAATLQPPI*FTASLQTPPVPLSPSTCTSL------PQATSHRRISAS-VPTTA 665
T + +T PP ++SL TP P P T TS P +TS ++S +PTT+
Sbjct: 167 TTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTS 226
Query: 666 S 668
+
Sbjct: 227 T 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,101
Number of Sequences: 5004
Number of extensions: 70344
Number of successful extensions: 256
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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