Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a12
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 43 4e-04
07_03_0971 + 23038409-23039134,23040321-23040611 35 0.075
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 34 0.13
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 32 0.70
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 31 1.6
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 31 1.6
03_05_0700 + 26920743-26920771,26920880-26920991,26921205-269213... 30 2.1
02_05_1214 + 34976814-34979813 30 2.1
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 30 2.8
01_01_0610 + 4533141-4533310,4534889-4535075,4535232-4535323,453... 30 2.8
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 29 3.7
04_04_1420 + 33441260-33443704 29 4.9
03_06_0713 - 35687672-35689219 29 4.9
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490... 29 4.9
09_04_0430 + 17502387-17503505 29 6.5
07_01_0601 + 4464745-4465010,4465274-4466582 29 6.5
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 28 8.6
09_04_0402 - 17304828-17305622 28 8.6
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 42.7 bits (96), Expect = 4e-04
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Frame = -2
Query: 814 VHQDKP--GVFITLSIDSELRIYNVKQASPLKIISLDYH-VSCVGWLPYNPWLAVVGTEA 644
VH+ P F + S D RI+++ + PL+I++ V CV W ++A ++
Sbjct: 329 VHEFSPVGHYFASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDK 388
Query: 643 EMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 491
+RL DV G + + + V LA++ G +A+GD +G + +WDL
Sbjct: 389 TVRLWDVQTGECIRMF-IGHRSMVLSLAMSP-DGRYMASGDEDGTIMMWDL 437
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 35.1 bits (77), Expect = 0.075
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = -2
Query: 814 VHQDKPG-VFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNP---WLAVVGTE 647
VH + G + ++ S D +I++ S LK + +D V + ++P ++ V +
Sbjct: 181 VHFIRDGSIIVSGSHDGTCKIWDAGTGSCLKTV-IDEKKPAVSFSMFSPNGKFILVAALD 239
Query: 646 AEMRLCDVACGREVHVDGLKGTGGVC-KLAVNQIGGCRVAAGDSEGCVKIWDL 491
++LC+ A G+ + + C + A + G + +G + CV IWDL
Sbjct: 240 DTLKLCNFASGKFLKMYSGHVNRKYCLQSAFSVTNGKYIVSGSEDNCVYIWDL 292
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 34.3 bits (75), Expect = 0.13
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = -2
Query: 799 PGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVA 620
PGVF T + + + D++++ V W +N + VG + L +
Sbjct: 169 PGVFTTRGTGPRKIPRSPYKVLDAPALQDDFYLNLVDWSSHN--ILAVGLGNCVYLWNAC 226
Query: 619 CGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRC 482
+ + L VC + Q G +A G ++G V++WD RC
Sbjct: 227 SSKVTKLCDLGVDDNVCSVGWAQ-RGTHLAVGTNQGKVQVWDATRC 271
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 31.9 bits (69), Expect = 0.70
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 535 VAAGDSEGCVKIWD 494
VA+GD EGC+K+WD
Sbjct: 108 VASGDDEGCIKVWD 121
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 667 LAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAA-GDSEGCVKIWDL 491
+AV GT E+ V L G G K + I G RVA GD EGCV D
Sbjct: 180 VAVKGTPREILSGISGSAAPGEVLALMGPSGSGKTTLLSILGGRVAGPGDVEGCVSYNDE 239
Query: 490 PRC 482
P C
Sbjct: 240 PYC 242
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = -2
Query: 778 SIDSELRIYNVKQASPLKIISLDYHVSC--VGWLPYNPWLAVVGTEAEMRLCDVACGREV 605
S + ++++++++A ++ ++ + SC V + P+ + A ++ ++++ D+ +
Sbjct: 175 SSNGSIKLWDLEEAKVVRSLT-GHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCI 233
Query: 604 HVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 491
H KG G + G V G + VK+WDL
Sbjct: 234 HT--YKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDL 269
>03_05_0700 +
26920743-26920771,26920880-26920991,26921205-26921306,
26921391-26921503,26921858-26921927,26922348-26922425,
26922500-26922616,26922738-26922832,26923080-26923159,
26923405-26923532
Length = 307
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = -2
Query: 790 FITLSIDSELRIYNVKQASPLKIISLDYHVS---CVGWLPYNPWLAVVGTEAEMRLCDV- 623
F+ + + +R++++ S +IS D H S VG+ W+ + +R+ D+
Sbjct: 60 FLAAAGNPHIRLFDINSNSNHPVISYDSHTSNVMAVGFHCDGNWMYSGSEDGTVRIWDLR 119
Query: 622 --ACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 491
C RE T L NQ + +GD G +++WDL
Sbjct: 120 TATCQREYESRAAVNT---VVLHPNQK---ELISGDQNGNIRVWDL 159
>02_05_1214 + 34976814-34979813
Length = 999
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 289 ELLMRVKVNSNLYRVTPAPLAANVG 363
EL +R +V S + R PAP+AAN G
Sbjct: 440 ELFVRAQVGSQMLRTRPAPVAANRG 464
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/104 (22%), Positives = 46/104 (44%)
Frame = -2
Query: 784 TLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVACGREV 605
T + D +R ++ ++ S + + + V+ P LAV+G ++ + D G+E
Sbjct: 238 TANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQSGKE- 296
Query: 604 HVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRCSHT 473
+ LKG + G VA G+ + ++WD+ S +
Sbjct: 297 -MARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRS 339
>01_01_0610 +
4533141-4533310,4534889-4535075,4535232-4535323,
4536203-4536308,4536441-4536649,4537049-4537091,
4537413-4537645,4537762-4538233
Length = 503
Score = 29.9 bits (64), Expect = 2.8
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = -2
Query: 814 VHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMR 635
V + KP + ++ S DS++++++ A P S SCVG + A + +
Sbjct: 253 VARHKPSLLVSCSKDSKVKLWDT-MAPPSSGSS-----SCVGSTHLSTNSAPIAVKCHES 306
Query: 634 LCDVACGREVHVDGLK--GTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRCSHTP 470
LC +A G EV L+ V L ++I C + SE + +WD+ + P
Sbjct: 307 LCYIAAGSEVTTIDLRTMKKASVLALRDHRILSCEML--PSEWAL-LWDIRKSQELP 360
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 534 TLQPPI*FTASLQTPPVPLSPSTCTSLP 617
TL P + PP PLSP CT+LP
Sbjct: 433 TLTTPSPSVPNTAAPPAPLSPLICTTLP 460
>04_04_1420 + 33441260-33443704
Length = 814
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = -2
Query: 625 VACGREVHVDGLKGTGGVCKLAVNQIGGCRVA-----AGD-SEGCVKIWDLPRC 482
VA GR+ +V GL G+ G+C C V A D S+GC + D+ RC
Sbjct: 283 VAVGRQCYVHGLCGSNGICSFRPGPTCSCPVGYVPNDASDWSKGCRRSPDV-RC 335
>03_06_0713 - 35687672-35689219
Length = 515
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 571 KRRPFL*AHRRALPSRKQRHTGASL-LPCRPRPARDCT 681
+RR A RR PSR+ H+GA+L L P PA T
Sbjct: 17 RRRSTAPARRRGPPSRRHPHSGAALTLRAAPPPATQPT 54
>01_01_0646 +
4904790-4904996,4905437-4905483,4905623-4905662,
4905770-4905970,4906260-4906472,4906561-4906629,
4906711-4906840,4906934-4906974,4907063-4907287,
4907575-4907745,4908713-4908778
Length = 469
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 228 FKKKNNQPSILKSI*PVRLVRAVNESES 311
FKKK N P LK I P ++RAV + S
Sbjct: 394 FKKKRNFPITLKYIDPTYMIRAVRSNAS 421
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 510 QPSESPAATLQPPI*FTASLQTPP-VPLSPSTCTSLPQATSHRRISASVPTTAS 668
QP P PP A L TPP P + + PQ+T +R++ P TA+
Sbjct: 165 QPQPQPPPQPTPPR--AAPLPTPPRAPPQSTPPRAAPQSTPPQRVAPQPPATAA 216
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 546 PI*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTASQGLYGSQ 689
PI TA LQ PP P + + S T + PTT+S + +Q
Sbjct: 185 PIAATAPLQPPPPPAAAAAAGSPSATTPEPGHGEATPTTSSSAQFQTQ 232
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 453 MSKSSPGVCEQRGRSQIFTQPS--ESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQA 623
M + G+ +Q+ Q P +PA T+ PP + Q PP P P+ TS+ A
Sbjct: 389 MMRFFEGLMKQKITGQTIPMPPIIAAPAITVMPPPAPSQQPQPPPPPSHPTPITSVAPA 447
>09_04_0402 - 17304828-17305622
Length = 264
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 513 PSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTASQGLYGSQP 692
P P PP+ T++ +PP S + S P + RR A + T G GS
Sbjct: 18 PLFKPTTPPPPPLLSTSTSTSPPHDFSFAHYLSSPPPSVQRRGRADMSRTPPLGRVGSDL 77
Query: 693 THD 701
+H+
Sbjct: 78 SHN 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,958,100
Number of Sequences: 37544
Number of extensions: 465702
Number of successful extensions: 1562
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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