Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a12
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    34   0.12 
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical ...    33   0.36 
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    32   0.48 
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U61949-2|AAB03152.1|  884|Caenorhabditis elegans Puromycin-sensi...    29   4.4  
U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensi...    29   4.4  
AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.      28   7.8  

>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +3

Query: 453 MSKSSPGVCEQRGRSQIFTQPSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSH 632
           ++   P   E+   ++  T  +E PA T  PP     +    P   + ST T+LP  T+ 
Sbjct: 539 ITTEEPTTTEESSTTEEVTT-TEEPANTGNPPTTENPTTTEQPTSTAESTTTALP-FTTE 596

Query: 633 RRISASVPTTASQGLYGSQPT 695
           + ++   PTTA +     +PT
Sbjct: 597 QTVTTEEPTTAEKSTATQKPT 617


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
 Frame = -2

Query: 859 QRCSRK--PRDLHFGCYVHQD-KPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVG 689
           QRCSR   P         +    P +F +   D +LR Y+ +   P++ + +   ++ + 
Sbjct: 409 QRCSRSLFPASKVLDVATNMGASPSLFASGHFDKKLRFYDGRSTDPVRTVDMGGRITSLD 468

Query: 688 WLPYNPWLAVVGTEAEMRLCDVACGREVHVDGLKG--TGGVCKLAVNQIGGCRVAAGDSE 515
                  L V   +  + L D+   + VH    +   T       V   G   VAAG S 
Sbjct: 469 VTMSGCELLVSTRDDTISLIDLRTFQTVHCYSAENYRTSSDLSRVVLSSGNEYVAAGSSN 528

Query: 514 GCVKIWD 494
           G + +W+
Sbjct: 529 GSIFVWN 535


>AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical
           protein C30F8.3 protein.
          Length = 328

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 25/77 (32%), Positives = 34/77 (44%)
 Frame = +3

Query: 462 SSPGVCEQRGRSQIFTQPSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRI 641
           S PG C     + +++ P   P A    P  FT     PP P+ PS   S  Q  S   I
Sbjct: 39  SRPGGCVAAAPAALYSAPVPPPPAYPFAPQVFTQPPPPPPPPVLPS-AASARQLPSAVVI 97

Query: 642 SASVPTTASQGLYGSQP 692
             SV  ++ QG+Y  +P
Sbjct: 98  PVSV-DSSYQGVYQDRP 113


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
 Frame = -2

Query: 877 RPR*SGQRCSRKPRDLHFGCYVHQDKPGVFIT-----LSIDSELRIYN-VKQASPLKIIS 716
           R + SGQ     P +  +G  V +   G+         S++S + + + VK A  +    
Sbjct: 103 RTKISGQNLCSLPGETIYGLRVGRLDKGMLAVNHRTDSSVNSTVTVIDLVKPARNIAHYD 162

Query: 715 LDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCR 536
               V+ + W+ + P+L  VG +  +R+ DV C +    + +   GGV K A+       
Sbjct: 163 SYSPVNTIDWIWHGPFLLAVGDDESLRVMDVRCPKA--FNAVFFDGGVQKTALCSTRPLE 220

Query: 535 VAAGDSEGCVKIWDLPR 485
           +A  +    V ++D+ R
Sbjct: 221 IACWNGSN-VLLYDVRR 236


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 513 PSESPAATLQPPI*FTASLQTPPVPLS-PSTCTSLPQATSHRRISASVPTTASQGLYGSQ 689
           P  +P  T  P    T S  +PP  ++ P+T T +P  T+    + +  T  + G  G+ 
Sbjct: 461 PPTTPGPTFYPVT--TVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTS 518

Query: 690 PT 695
           PT
Sbjct: 519 PT 520


>Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical
           protein ZC302.2a protein.
          Length = 501

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = -2

Query: 778 SIDSELRIYNVKQASPLKII-SLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVACGREVH 602
           S D+ ++I++V   + L+ +     +V C  + P +  +A  G +  +R+ D   G  V 
Sbjct: 274 SDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAGFDETVRVWDFKTGLCVK 333

Query: 601 VDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWD 494
                 +  +  ++ N  G   +A    +GC+++WD
Sbjct: 334 CIPAH-SDPITSISYNHDGNT-MATSSYDGCIRVWD 367


>U61949-2|AAB03152.1|  884|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform a
           protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 766 ELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAV 659
           E+R+Y V         SLD  V C+ W  YN W  +
Sbjct: 226 EMRVYTVPGKKEQGQYSLDLSVKCIDW--YNEWFDI 259


>U61949-1|AAY44009.1|  948|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform b
           protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 766 ELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAV 659
           E+R+Y V         SLD  V C+ W  YN W  +
Sbjct: 290 EMRVYTVPGKKEQGQYSLDLSVKCIDW--YNEWFDI 323


>AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical
           protein Y44F5A.1 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -2

Query: 757 IYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRL-CDVACGREVHVDGLKGT 581
           I+  +  S ++ + LD H   V  +  N  L V   +   R+ C + C R V        
Sbjct: 45  IWKFQTKSSIRGVDLDEHKKRVYAVTKNRSLCVFDIDTGKRVRCILKCHRSVPT------ 98

Query: 580 GGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 491
             +C L    +   ++A  D  G VK W+L
Sbjct: 99  -AICTLPPTALKSQQLATADESGEVKTWNL 127


>AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -2

Query: 757 IYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRL-CDVACGREVHVDGLKGT 581
           I+  +  S ++ + LD H   V  +  N  L V   +   R+ C + C R V        
Sbjct: 45  IWKFQTKSSIRGVDLDEHKKRVYAVTKNRSLCVFDIDTGKRVRCILKCHRSVPT------ 98

Query: 580 GGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 491
             +C L    +   ++A  D  G VK W+L
Sbjct: 99  -AICTLPPTALKSQQLATADESGEVKTWNL 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,829,777
Number of Sequences: 27780
Number of extensions: 397224
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)