Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a12
(887 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.8
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.8
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 3.7
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.7
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 6.5
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 8.6
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 22 8.6
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 22 8.6
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 8.6
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 22 8.6
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 22 8.6
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 22 8.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 8.6
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 515 FRVTRRHPATPDLIHGQLTNAARSFEPIDVHFPPASNV 628
+RVT + TPD + QL ++ +F ASN+
Sbjct: 855 YRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQASNL 892
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 515 FRVTRRHPATPDLIHGQLTNAARSFEPIDVHFPPASNV 628
+RVT + TPD + QL ++ +F ASN+
Sbjct: 851 YRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQASNL 888
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 23.0 bits (47), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 770 INGQCYKNARLILV-NVTAKMQVAWLSRTSLTGSTWPL 880
IN C + ++V NVT + S S++G+T P+
Sbjct: 819 INDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPI 856
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 3.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 691 GWLPYNPWLAVVGTEAEMRLCDVACGREVHVDGLKG 584
G L Y P + E+R DV G + HV G+KG
Sbjct: 513 GILVYEP--SACRPRHEIRSTDVIPGTQEHVCGVKG 546
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 157 DYLCPSIDRRLLGKTNRKSK 216
DY P + RRL+ + R SK
Sbjct: 781 DYRIPEVMRRLMSEDKRLSK 800
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 114 YSNKKLLKNSYFLHRLSMSIHR*AFIRKNKP 206
Y K L YFL R+S + + A NKP
Sbjct: 262 YFLHKQLMTRYFLERMSNDLGKTAEFDWNKP 292
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.8 bits (44), Expect = 8.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 114 YSNKKLLKNSYFLHRLS 164
YS+K LL N Y+L RLS
Sbjct: 261 YSHKLLL-NRYYLERLS 276
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.8 bits (44), Expect = 8.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 114 YSNKKLLKNSYFLHRLS 164
YS+K LL N Y+L RLS
Sbjct: 261 YSHKLLL-NRYYLERLS 276
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 114 YSNKKLLKNSYFLHRLSMSIHR*AFIRKNKP 206
Y K L YFL R+S + + A NKP
Sbjct: 262 YFLHKQLMTRYFLERMSNDLGKTAEFDWNKP 292
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -2
Query: 856 RCSRKPRDLHFGCYVHQDKPGV 791
RC+ +P D + + D+PG+
Sbjct: 121 RCTERPEDGALILHYYSDRPGL 142
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -2
Query: 673 PWLAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQI 548
P L V + L + ++ V+ G GG+ LAV I
Sbjct: 153 PKLHVFDLKTSNHLKQIEIPHDIAVNATTGKGGLVSLAVQAI 194
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -2
Query: 856 RCSRKPRDLHFGCYVHQDKPGV 791
RC+ +P D + + D+PG+
Sbjct: 121 RCTERPEDGALILHYYSDRPGL 142
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/36 (25%), Positives = 16/36 (44%)
Frame = -2
Query: 727 KIISLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVA 620
K I + +CV WL + P G +R+ ++
Sbjct: 848 KHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMS 883
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,591
Number of Sequences: 438
Number of extensions: 4798
Number of successful extensions: 25
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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