Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a11
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0251 + 16436846-16438237 29 1.2
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 2.0
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 28 2.0
01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955 28 2.0
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 27 2.7
04_01_0481 - 6302066-6303118 27 3.6
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 3.6
01_06_1475 + 37634831-37636297 27 4.7
01_03_0253 + 14273324-14273707 27 4.7
07_03_0179 + 14801037-14801108,14801325-14802788 26 6.2
03_05_0316 - 23045214-23045261,23045322-23045400,23045548-230457... 26 8.3
02_04_0436 - 22920106-22920348,22920569-22920884,22929569-229300... 26 8.3
01_04_0043 + 15375459-15377606 26 8.3
>12_02_0251 + 16436846-16438237
Length = 463
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 200 GADSRAK---LSVSCTSLVPADKPRLHRASCSTP 292
GA +R+ LSVSCT +V +HR+ CS P
Sbjct: 358 GASARSAPRLLSVSCTRVVDLTTTGVHRSPCSPP 391
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 203 ADSRAKLSVSCTSLVPADKPRLHRASCSTPY 295
A S +KLS C +VP P L R SC +PY
Sbjct: 273 AVSFSKLSSFCNLMVPIGPPSLSR-SCMSPY 302
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 288 VEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESFSA 151
VEQ CN + G+ LV + ++++E G K S++ + +A
Sbjct: 608 VEQKPECNGSSNGGSSLVDKKSAVSKEQQNGGMKKVGSNKVQPNAA 653
>01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955
Length = 406
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -1
Query: 257 CQPAPNWYMRRTAWRESPPLMGVPRQLAAGLRASVQLTNRPIFIFKIPSVRSQD 96
C P+P R T+ SPPL P AAG A+ T P + + PSV + +
Sbjct: 4 CSPSPRRRGRPTSPSGSPPLDRTPSAKAAGGGATT--TVSPYALARSPSVSAAE 55
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 218 KLSVSCTSLVPADKPRLHRASCS 286
+L ++C+SL P+D+PR +A S
Sbjct: 214 RLGLACSSLAPSDRPRFGQAVVS 236
>04_01_0481 - 6302066-6303118
Length = 350
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 294 YGVEQLARCNLGLSAGTKLVHETDSLARE 208
YG+++ + NL +SAG H+T RE
Sbjct: 171 YGLDKESTANLDISAGGSFAHKTTKEGRE 199
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 288 VEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESF 157
+EQ+ R +LG+++ T L ++ +AP G + +SF
Sbjct: 533 LEQVRRTDLGVNSPTALTSRVSNIPEVNAPQGTNPLRHHSLQSF 576
>01_06_1475 + 37634831-37636297
Length = 488
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 249 GTKLVHETDSLARESAPDGRSKTTSSRT 166
G+KLV E+ + A P G S+ TSS+T
Sbjct: 426 GSKLVFESLAQAAAPPPSGSSQQTSSKT 453
>01_03_0253 + 14273324-14273707
Length = 127
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 179 VVLERPSGADSRAKLSVSCTSLVPADKP 262
V+L RP+ D R S +CT L + KP
Sbjct: 75 VLLSRPADDDGRVHASFACTLLDKSGKP 102
>07_03_0179 + 14801037-14801108,14801325-14802788
Length = 511
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 294 YGVEQLARCNLGLSAGTKLVHETDSLARE 208
YG+++ + NL +SAG H+T + RE
Sbjct: 60 YGLDKESAKNLDISAGGSFAHKTTTEGRE 88
>03_05_0316 -
23045214-23045261,23045322-23045400,23045548-23045707,
23046937-23047006,23047439-23048017
Length = 311
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 294 YGVEQLARCNLGLSAGTKLVHETDSLARE 208
YG+++ + NL +SAG H+T + RE
Sbjct: 75 YGLDKDSAANLDISAGGSFGHKTTAEGRE 103
>02_04_0436 -
22920106-22920348,22920569-22920884,22929569-22930027,
22930187-22930401,22930741-22930803,22930814-22930830,
22931141-22931389,22931546-22931774,22932427-22932534,
22932954-22933094,22933669-22933729,22933974-22934095,
22934533-22934760,22934857-22935000
Length = 864
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 194 GVPRQLAAGLRASVQ 150
GVPR+L AG+RA+V+
Sbjct: 605 GVPRELQAGMRAAVR 619
>01_04_0043 + 15375459-15377606
Length = 715
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 308 GFNVNTEL-NNWLDVTLACQPAPNWYMRRTAWRESP 204
G+ + T + ++W+ V+ C+ Y RR +WR+SP
Sbjct: 401 GWEIATYVRSDWIKVSAICE-----YARRPSWRKSP 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,790,447
Number of Sequences: 37544
Number of extensions: 145719
Number of successful extensions: 434
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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