Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a11
         (329 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277916-1|CAB98128.1|  257|Homo sapiens LIM-homeobox 9 protein.       31   0.86 
U76362-1|AAB53971.1|  560|Homo sapiens retinal glutamate transpo...    31   1.1  
BC017242-1|AAH17242.1|  560|Homo sapiens solute carrier family 1...    31   1.1  
BC012119-1|AAH12119.1|  560|Homo sapiens solute carrier family 1...    31   1.1  
AL445183-7|CAH72594.1|  560|Homo sapiens solute carrier family 1...    31   1.1  
AL121749-2|CAH73708.1|  370|Homo sapiens connexin40.1 protein.         29   4.6  
AK074504-1|BAC11028.1|  370|Homo sapiens protein ( Homo sapiens ...    29   4.6  
AJ414564-1|CAC93846.1|  370|Homo sapiens connexin40.1 protein.         29   4.6  
AF220191-1|AAF67656.1|  261|Homo sapiens uncharacterized hypotha...    28   6.0  

>AJ277916-1|CAB98128.1|  257|Homo sapiens LIM-homeobox 9 protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 294 YGVEQLARCNLGLSAGTKL-VHETDSLARESAPDGRSKTTSSRTESF 157
           + V++ ARC+LG+SA      +E D L R+  P   S+ T     SF
Sbjct: 70  FSVQRCARCHLGISASESCNENEADHLDRDQQPYPPSQKTKRMRTSF 116


>U76362-1|AAB53971.1|  560|Homo sapiens retinal glutamate
           transporter EAAT5 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 242
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>BC017242-1|AAH17242.1|  560|Homo sapiens solute carrier family 1
           (glutamate transporter), member 7 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 242
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>BC012119-1|AAH12119.1|  560|Homo sapiens solute carrier family 1
           (glutamate transporter), member 7 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 242
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>AL445183-7|CAH72594.1|  560|Homo sapiens solute carrier family 1
           (glutamate transporter), member 7 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 242
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>AL121749-2|CAH73708.1|  370|Homo sapiens connexin40.1 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 188 ERPSGADSRAKLSVSCTSLVPADKP 262
           E+PS A SR     SC+SL P D P
Sbjct: 329 EQPSAAPSRLAAPPSCSSLQPPDPP 353


>AK074504-1|BAC11028.1|  370|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90023 fis, clone HEMBA1000940, moderately
           similar to Connexin40.1. ).
          Length = 370

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 188 ERPSGADSRAKLSVSCTSLVPADKP 262
           E+PS A SR     SC+SL P D P
Sbjct: 329 EQPSAAPSRLAAPPSCSSLQPPDPP 353


>AJ414564-1|CAC93846.1|  370|Homo sapiens connexin40.1 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 188 ERPSGADSRAKLSVSCTSLVPADKP 262
           E+PS A SR     SC+SL P D P
Sbjct: 329 EQPSAAPSRLAAPPSCSSLQPPDPP 353


>AF220191-1|AAF67656.1|  261|Homo sapiens uncharacterized
           hypothalamus protein HSMNP1 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 207 SAPDGRSKTTSSRTESFSAAD**TDIHFQNP 115
           S P   S  T+SRT S S++D  T++H  NP
Sbjct: 202 SLPVATSDRTTSRTSSSSSSDSSTNLHSPNP 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,536,991
Number of Sequences: 237096
Number of extensions: 818150
Number of successful extensions: 1879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)