Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a11
         (329 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night...    29   1.4  
AE013599-1158|AAF58763.4| 3574|Drosophila melanogaster CG11895-P...    29   1.4  
AB028498-1|BAA84069.1| 3575|Drosophila melanogaster Flamingo pro...    29   1.4  
AY118589-1|AAM49958.1|  941|Drosophila melanogaster LD45221p pro...    28   2.5  
AE013599-3618|AAF47019.2|  941|Drosophila melanogaster CG5360-PA...    28   2.5  
AE014297-3992|AAF56620.1|  103|Drosophila melanogaster CG14245-P...    26   10.0 

>AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night
            protein protein.
          Length = 3579

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 291  GVEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESFSAA 148
            G +   R N+G+SA +     T   +     DG+ + TS+ T ++++A
Sbjct: 3101 GYDTTTRRNIGISASSTTSRSTAKTSSSPYSDGQLRQTSTSTSNYNSA 3148


>AE013599-1158|AAF58763.4| 3574|Drosophila melanogaster CG11895-PA
            protein.
          Length = 3574

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 291  GVEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESFSAA 148
            G +   R N+G+SA +     T   +     DG+ + TS+ T ++++A
Sbjct: 3101 GYDTTTRRNIGISASSTTSRSTAKTSSSPYSDGQLRQTSTSTSNYNSA 3148


>AB028498-1|BAA84069.1| 3575|Drosophila melanogaster Flamingo protein.
          Length = 3575

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 291  GVEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESFSAA 148
            G +   R N+G+SA +     T   +     DG+ + TS+ T ++++A
Sbjct: 3102 GYDTTTRRNIGISASSTTSRSTAKTSSSPYSDGQLRQTSTSTSNYNSA 3149


>AY118589-1|AAM49958.1|  941|Drosophila melanogaster LD45221p
           protein.
          Length = 941

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 85  RLSQS*DRTEGILKMNIGLLVSCTEALSPAASCLGTPIRGGLSR 216
           +L+Q    T G  ++++GL  S +  ++PA+   GTP+   L R
Sbjct: 625 KLAQHAAATPGQTRLSLGLSGSSSNLVNPASFASGTPLASKLHR 668


>AE013599-3618|AAF47019.2|  941|Drosophila melanogaster CG5360-PA
           protein.
          Length = 941

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 85  RLSQS*DRTEGILKMNIGLLVSCTEALSPAASCLGTPIRGGLSR 216
           +L+Q    T G  ++++GL  S +  ++PA+   GTP+   L R
Sbjct: 625 KLAQHAAATPGQTRLSLGLSGSSSNLVNPASFASGTPLASKLHR 668


>AE014297-3992|AAF56620.1|  103|Drosophila melanogaster CG14245-PA,
           isoform A protein.
          Length = 103

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 278 WLDVTLACQPAPNWYMRRTAWRESPP 201
           WLD   AC P P W    T    S P
Sbjct: 74  WLDSAKACVPWPQWVWSPTVQPPSQP 99


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,817
Number of Sequences: 53049
Number of extensions: 241500
Number of successful extensions: 549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 714329562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)