Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a11
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    29   0.79 
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical...    26   5.5  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    26   5.5  
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    25   9.7  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    25   9.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    25   9.7  
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     25   9.7  
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     25   9.7  

>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 285 EQLARCNLGLSAGTKLVHETDSLARE 208
           E+LA CNLGL AG  +++  D +  E
Sbjct: 80  EELAACNLGLPAGNSILNVDDDVRLE 105


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 285 EQLARCNLGLSAGTKLVHETDSLARE 208
           E+LA CNLGL AG  +++  D +  E
Sbjct: 132 EELAACNLGLPAGNSILNVDDDVRLE 157


>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform c
           protein.
          Length = 1310

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -1

Query: 311 LGFNVNTELNNWLDVTLACQPAPNWYMRRTAW-RESPP 201
           L  N NTE N  L V+        W M   AW R S P
Sbjct: 118 LDMNKNTEANLALTVSCLASQTVTWMMTEFAWNRASSP 155


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -1

Query: 311  LGFNVNTELNNWLDVTLACQPAPNWYMRRTAW-RESPP 201
            L  N NTE N  L V+        W M   AW R S P
Sbjct: 1264 LDMNKNTEANLALTVSCLASQTVTWMMTEFAWNRASSP 1301


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 242 NWYMRRTAWRESPPLMGVPRQ 180
           NW + R  WR    L+G PR+
Sbjct: 254 NWNLTRIEWRSIRKLLGKPRR 274


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 242 NWYMRRTAWRESPPLMGVPRQ 180
           NW + R  WR    L+G PR+
Sbjct: 252 NWNLTRIEWRSIRKLLGKPRR 272


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 185 RQLAA-GLRASVQLTNRPIFIFKIPSVRSQDW 93
           RQL A G    V+L  +P+F   + SV+SQ+W
Sbjct: 661 RQLKADGDNFKVKLNTQPMFDEWVESVQSQNW 692


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 185 RQLAA-GLRASVQLTNRPIFIFKIPSVRSQDW 93
           RQL A G    V+L  +P+F   + SV+SQ+W
Sbjct: 661 RQLKADGDNFKVKLNTQPMFDEWVESVQSQNW 692


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 242 NWYMRRTAWRESPPLMGVPRQ 180
           NW + R  WR    L+G PR+
Sbjct: 252 NWNLTRIEWRSIRKLLGKPRR 272


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 242 NWYMRRTAWRESPPLMGVPRQ 180
           NW + R  WR    L+G PR+
Sbjct: 254 NWNLTRIEWRSIRKLLGKPRR 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,669
Number of Sequences: 27780
Number of extensions: 122152
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)