Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a11
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   6.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 233  MRRTAWRESPP 201
            + RTAWR+  P
Sbjct: 1345 LERTAWRQQQP 1355


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 245 VPADKPRLHRASCSTPYSH*ILNV 316
           VPA++ + +   C  PY     N+
Sbjct: 206 VPAERHKKYYPCCDEPYPDIFFNI 229


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 245 VPADKPRLHRASCSTPYSH*ILNV 316
           VPA +   +   C+ PYS    N+
Sbjct: 220 VPASRNEEYYPCCTEPYSDITFNI 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,509
Number of Sequences: 438
Number of extensions: 1510
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)