Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a09
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0359 - 29539294-29540832,29542366-29542518                       29   3.8  
08_01_0842 - 8252232-8253155                                           29   5.0  

>05_07_0359 - 29539294-29540832,29542366-29542518
          Length = 563

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 442 SSMPPEVTRTGRKKK*TAFFPVP 510
           SS PP+    GR +K TA FPVP
Sbjct: 133 SSAPPQKRGPGRPRKNTALFPVP 155


>08_01_0842 - 8252232-8253155
          Length = 307

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 453 GHTRFSRG--VGELTEL*PEDVANTSPSKSSASQNLPPDRTR 334
           GH RF RG  VG          A+ SPS S  S  LPP  T+
Sbjct: 86  GHARFRRGPVVGAAAAEAAAAAASASPSSSPVSPPLPPVTTQ 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,479,165
Number of Sequences: 37544
Number of extensions: 390439
Number of successful extensions: 839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)