Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a09
         (891 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    33   1.8  
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYI 812
           YI+TY+ L I IYIY  + + +Y+ LYI
Sbjct: 40  YIFTYIYLYIFIYIYICLYIYLYIYLYI 67



 Score = 32.3 bits (70), Expect = 2.4
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYI 812
           YI+TY+ + +HI+IY +I + + + LYI
Sbjct: 66  YIFTYIYIYLHIFIYLHIFIYICICLYI 93



 Score = 31.9 bits (69), Expect = 3.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYISL 818
           Y+Y Y+ L I+ YI+  I L +++ +YI L
Sbjct: 28  YVYVYIYLYIYFYIFTYIYLYIFIYIYICL 57



 Score = 31.1 bits (67), Expect = 5.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYISL 818
           YIY Y+   I++YI+  I + +Y+ LYI L
Sbjct: 36  YIYFYIFTYIYLYIFIYIYICLYIYLYIYL 65



 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYISL 818
           YIY Y+   I  YIY  I + +Y+ LYI L
Sbjct: 32  YIYLYIYFYIFTYIYLYIFIYIYICLYIYL 61



 Score = 30.3 bits (65), Expect = 9.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYISL 818
           Y+Y Y+ + I I+IY  I + +Y+ +YI L
Sbjct: 6   YVYIYMFMYIFIFIYIFIYIYIYVYVYIYL 35



 Score = 30.3 bits (65), Expect = 9.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYI 812
           Y++ Y+ + I+I+IY  I + VY+ LYI
Sbjct: 10  YMFMYIFIFIYIFIYIYIYVYVYIYLYI 37



 Score = 30.3 bits (65), Expect = 9.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 729 YIYTYLMLTIHIYIYANIPLTVYLGLYI 812
           YIY Y+ L I  YIY  + + +YL ++I
Sbjct: 58  YIYLYIYLYIFTYIYIYLHIFIYLHIFI 85


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 693 VYT-EHVSTQDIKYIYTYLMLTIHIYIYANIPLTVYLGLYI 812
           +YT +H+      Y+YTY  + +HI+I  +I L +Y   Y+
Sbjct: 47  MYTHKHMYVYTYIYVYTYTYVCVHIHICVHIYLCMYTHTYM 87



 Score = 30.3 bits (65), Expect = 9.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 705 HVSTQDIKYIYTYLMLTIHIYIYANIPLTVYLGLY 809
           H+      YIY Y+   IHI ++ N+ +++Y+ +Y
Sbjct: 90  HIHMCVYTYIYVYIYTHIHICVHINMYVSIYVYIY 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,265,768
Number of Sequences: 237096
Number of extensions: 2264517
Number of successful extensions: 4272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4254
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)