Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a09
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   8.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 361 AESTTGSHTRPTERIRRETQ 302
           A  TTG+ T PT R+R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 699 YKLITHFIN*FAQIQLPMQCYY 634
           YK + + IN   QI +P+  YY
Sbjct: 99  YKQLCYNINYIEQIPVPVPVYY 120


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 699 YKLITHFIN*FAQIQLPMQCYY 634
           YK + + IN   QI +P+  YY
Sbjct: 99  YKQLCYNINYIEQIPVPVPVYY 120


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 699 YKLITHFIN*FAQIQLPMQCYY 634
           YK + + IN   QI +P+  YY
Sbjct: 99  YKQLCYNINYIEQIPVPVPVYY 120


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 699 YKLITHFIN*FAQIQLPMQCYY 634
           YK + + IN   QI +P+  YY
Sbjct: 99  YKQLCYNINYIEQIPVPVPVYY 120


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 699 YKLITHFIN*FAQIQLPMQCYY 634
           YK + + IN   QI +P+  YY
Sbjct: 99  YKQLCYNINHIEQIPVPVPVYY 120


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 699 YKLITHFIN*FAQIQLPMQCYY 634
           YK + + IN   QI +P+  YY
Sbjct: 99  YKQLCYNINYIEQIPVPVPVYY 120


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 876 HC*REITLTSIVMCRLKVTIKKCIVLSILLTG 781
           +C R  T+T+   C+L    ++C    ++ TG
Sbjct: 173 NCKRTATITAATDCQLWAIDRQCFQTIMMRTG 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,806
Number of Sequences: 438
Number of extensions: 4323
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)