Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a07
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 35 0.005
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 1.0
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 1.3
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 26 2.3
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 25 4.1
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 5.4
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 7.1
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 24 9.4
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 24 9.4
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 9.4
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 34.7 bits (76), Expect = 0.005
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = -3
Query: 273 LDLLTGIEKRELLAHLAG-DCDPFRILSIKKGPGTRERPNLIPSSNSSRLICCHCTESDN 97
L+ TG+E+ ELL+ L+G D + L + GT P ++ S + R I C + S +
Sbjct: 69 LEQATGLERYELLSELSGRDAFDMKPLDASR-KGTLTDPIMVTSLDPYRHIGCTGSPSGS 127
Query: 96 H-LKFMWLHQGDPKRC-GCGYWFEL 28
H L +M +++ +RC CG ++L
Sbjct: 128 HNLIWMTVYKDKLRRCPECGSVYKL 152
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 1.0
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = -2
Query: 229 FSGRLRSIPYSFHQERTRNTRASELDTQLKLISSHL--LSLYRVGQPSEIYVATPRRSKT 56
F+G +++ +SF RTRNTR + + K +SS L ++Y PS YV + +
Sbjct: 887 FTGVCQAVKFSFQCLRTRNTRKLD-HGEFKKLSSFLSQRNMY-YANPSLCYVYGKKHMQA 944
Query: 55 MRLWILV*IMSNCTAL 8
+ I++ ++ T +
Sbjct: 945 RIIGIMLLLLMAMTVV 960
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 1.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 264 KGPKGQLVFYRIGLQASRRRATILITYLD 350
+GP+G ++FYR G ++ +R ++ L+
Sbjct: 252 RGPRGAMIFYRKGTRSHDKRGNPILYELE 280
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 25.8 bits (54), Expect = 2.3
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 241 ITRAFSGRLRSIPYSFHQE-RT---RNTRASELDTQLKLISSHLLSLYRVGQ 98
I RA GRLR PY HQ RT R +A + D + L+ S +L+ + Q
Sbjct: 5 IKRA-EGRLREDPYEGHQMLRTLVNRQVKAKKHDDAVALLYSGAKTLFEIEQ 55
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 212 SQSPAKCASNSRFSMPVKRSKGSISFL*NRTPSLE 316
S SP + +S+S FS+P + ++SF N P +
Sbjct: 178 SDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQTD 212
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 150 PSSNSSRLICCHCTE 106
P + SR ICC+CT+
Sbjct: 413 PLLSRSRFICCYCTK 427
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 8 QSGAIGHNSNQYPQPHRFGSPWCSHINFRWLSDS 109
Q G I +N N +P + G P SH F+ L+D+
Sbjct: 134 QWGLINYNVNPDTRPSKIGPPSTSH--FQILADT 165
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 81 T*ISDGCPTRYNDSK*DEMSLSWVSSS 161
T + D CP ND DE + S SSS
Sbjct: 45 TLLEDPCPENVNDENEDEQNRSSRSSS 71
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 23.8 bits (49), Expect = 9.4
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +3
Query: 264 KGPKGQLVFYRIGLQ 308
+GP+G ++F+R GL+
Sbjct: 246 RGPRGAMIFFRRGLR 260
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 92 RWLSDSVQ*QQMRRDEFELGIKFG 163
RWLS S+ Q E EL ++FG
Sbjct: 629 RWLSRSLHVLQSFSGEIELNLEFG 652
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,804
Number of Sequences: 5004
Number of extensions: 32266
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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