Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16a07
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224... 43 7e-05
01_05_0682 + 24251861-24251911,24252036-24252086,24255244-242553... 41 4e-04
04_04_0498 - 25654988-25655168,25658149-25658257,25658376-256584... 29 1.7
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 28 2.9
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 28 2.9
08_02_1449 - 27174451-27178005 27 3.8
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 27 5.1
05_04_0374 - 20736615-20737037,20737148-20737639,20738145-207384... 26 8.9
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 26 8.9
>06_01_0311 -
2243117-2243185,2243321-2243400,2243554-2243620,
2245176-2245226,2245317-2245402,2245501-2245612
Length = 154
Score = 43.2 bits (97), Expect = 7e-05
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = -3
Query: 279 DPLDLLTGIEKRELLAHLAGDCDPFRILSIKKGP-GTRERPNLIPSSNSSRLICCHCTE- 106
D + + TG+E+ E+ A L G F + GP GT+E P +I S + R++ C E
Sbjct: 48 DVMPIATGLEREEIAAELQGK-KRFD-MDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEG 105
Query: 105 SDNH-LKFMWLHQGDPKRCG-CGYWFEL 28
D H + + WL +G P C C +F L
Sbjct: 106 EDEHDVVWFWLEKGKPHECPVCTQYFSL 133
>01_05_0682 +
24251861-24251911,24252036-24252086,24255244-24255310,
24255405-24255484,24255631-24255696
Length = 104
Score = 40.7 bits (91), Expect = 4e-04
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = -3
Query: 273 LDLLTGIEKRELLAHLAGDCDPFRILSIKKGP-GTRERPNLIPSSNSSRLICCHCTE-SD 100
+ + TG+E+ EL A L G+ F + GP GT+E P +I S + R++ C E D
Sbjct: 1 MPIATGLEREELAAELKGE-KRFD-MDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGED 58
Query: 99 NH-LKFMWLHQGDPKRCG-CGYWFEL 28
H + + WL + +P C C +F L
Sbjct: 59 EHDVVWFWLKKDEPHECPVCSQYFVL 84
>04_04_0498 -
25654988-25655168,25658149-25658257,25658376-25658478,
25658634-25658883,25659011-25659126,25659332-25659587,
25659713-25659800,25659951-25660025,25660143-25660218,
25660308-25660366,25660972-25661038,25668502-25668810
Length = 562
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 321 GVSRLGVRFYRKLIDPLDLLTGIEKRELLAH 229
GV+ G+ FY KLID + LL GI+ L H
Sbjct: 176 GVNPAGIDFYNKLIDSI-LLKGIQPFVTLTH 205
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 282 IDPLDLLTGIEKRELLAHLAGDCDPFRILSIKKGPGTRERPNLIPSSNS 136
I+ L+ + KR L + D R S KGPG + +PS++S
Sbjct: 655 IEKRKYLSPVTKRRRLTSCSNDQTSRRSFSFSKGPGLEKEKVKLPSTSS 703
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 194 ERIRNGSQSPAKCASNSRFSMPVKRSKGS 280
+R S + AKC N S P+KR +GS
Sbjct: 48 KRTTRSSANLAKCIENKHHSSPLKRRRGS 76
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 258 GIEKRELLAHLAGDCDPFRILSIKKGPGTRERPNLIPSSNSSRLIC--CH 115
G+E+ + L HL G + F + +I+ G RE NL N + L+ CH
Sbjct: 685 GLEELKDLHHLGGRLELFNLKAIQSGSNARE-ANLHIQENVTELLLHWCH 733
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 171 RERPNLIPSSNSSRLICCHCTESDNHLKFMWLHQGDPK 58
RE P + P + SR C+ TE K +LH+GD K
Sbjct: 298 REGPAMYPCYSGSR---CYDTEGGYKCKCRFLHRGDGK 332
>05_04_0374 -
20736615-20737037,20737148-20737639,20738145-20738422,
20738576-20738732
Length = 449
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 192 WKEYGMDRNLPLNARVIHVSRC----RSKGPKG 278
WK G DR + LN+R++ + K PKG
Sbjct: 89 WKTSGKDRTIELNSRIVGSKKTLIFHEGKAPKG 121
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 270 DLLTGIEKRELLAHLAGDCDPF 205
DL TG++ EL + L GD DPF
Sbjct: 342 DLNTGLQLSELNSVLDGDIDPF 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,546,490
Number of Sequences: 37544
Number of extensions: 215759
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -