Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15p24
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 268 3e-73
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 120 1e-28
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 116 3e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 69 6e-13
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 29 0.47
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 1.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 1.9
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 3.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 3.3
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 3.3
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 26 4.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.4
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.4
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 26 4.4
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 268 bits (658), Expect = 3e-73
Identities = 119/152 (78%), Positives = 140/152 (92%)
Frame = -3
Query: 561 GSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNK 382
GS ++A+SVPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q K
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 381 NSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLH 202
NS+YFVEWIP+NV AVC +PP+ LKMSATFIGN+T+IQE+F+R+ +QF+AMFRRKAFLH
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLH 396
Query: 201 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 106
WYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+A
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 120 bits (289), Expect = 1e-28
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 8/148 (5%)
Frame = -3
Query: 537 SVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEW 358
SV E+T Q F+ N M CDPR GRY+ ++RG + ++V + I+ K + FV+W
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346
Query: 357 IPNNVKTAVCDIPPRGLKMS--------ATFIGNTTAIQELFKRISEQFTAMFRRKAFLH 202
P K +CD PP+ ++ S + NTT+I E + R+ +F M+ ++AF+H
Sbjct: 347 CPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 406
Query: 201 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 118
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 116 bits (278), Expect = 3e-27
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 8/148 (5%)
Frame = -3
Query: 537 SVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEW 358
SV E+T Q F+ N M CDPR GRY+ ++RG + ++V + +I+++ + FV+W
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDW 350
Query: 357 IPNNVKTAVCDIPPR--------GLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLH 202
P K +C PP+ + + + NTT+I E + R+ +F M+ ++AF+H
Sbjct: 351 CPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 410
Query: 201 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 118
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 411 WYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.5 bits (160), Expect = 6e-13
Identities = 38/153 (24%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Frame = -3
Query: 546 RALSVPELTQQMFDAKNMMAACDP-RHGRYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSY 370
R +V ++ +++ KN M + +P + ++++ + +G +V + +L I+ + +
Sbjct: 288 RKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYAS 347
Query: 369 FVEWIPNNVKTAVCDIPP---RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHW 199
F+ W P +++ A+ P ++S + N T+I LFKR +Q+ + +R AFL
Sbjct: 348 FIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQ 407
Query: 198 YTGEGMDEMEFTEAESNMN---DLVSEYQQYQD 109
Y E + E + E +S+ + DL++EY+ +D
Sbjct: 408 YKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 444 VFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIG--NTTA 271
V+ + ++ + + ++NI+ N S W+PN + +P G K+S I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 270 IQELFK 253
+EL++
Sbjct: 403 KEELYE 408
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 250 SFKQLLDSCGVSDEGGRHFESTRWNVAHGRLDVIGNPFHEVAAIFV 387
+FK++ C V DE R + + + L+++GNP H F+
Sbjct: 265 NFKKI--KCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFI 308
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 282 NTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 175
N++ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 67 LYLFIKFPFIISRGVLILLVLRNQIVHVRFSLRELHFIHT 186
LY+ I F I +RG L L +N ++ + F LR ++F T
Sbjct: 1075 LYVAIPFRTIFNRGTLALDAFQNWVIGL-FMLRMIYFTVT 1113
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 3.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 288 IGNTTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 112
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.3
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -1
Query: 293 PSSETPQLSKSCLKEFLNNLQPCSDEKLSCTGTRGRVWMKWSSRRLNRT*TIWFRSTSSI 114
PSS+ ++ K L F+ N+ ++ T +VW+ SS L+ T W +S++
Sbjct: 562 PSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLD-SSSVLHEKKTPWIMYSSAV 620
Query: 113 KTPRLMMKGNLMK 75
++ + N+ K
Sbjct: 621 ESETQIFVKNISK 633
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +1
Query: 196 VPVQESFSSEHGCKL---FRNSFKQLLDSCGVSDEGGRHFESTRWNVAH 333
+P +S H +L F K ++ S+E HF+ TRW + +
Sbjct: 1216 LPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTRWKIIY 1264
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 465 RYLTVAAVFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 340
RYLT V + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 465 RYLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 349
+Y+ +VF G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +1
Query: 379 IFVLYVEHLFVHFLHRHPSAENGSDGQISTMARVTGSHHVLGIKHL 516
+F+ + + LH H S+ +D I + V GS G++ +
Sbjct: 403 VFIEFNSDSGITSLHLHASSNTNADNIIRALGDVAGSARAAGLREI 448
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 311 DSKCLPPSSETPQLSKSCLKEFLNNLQPCSDE 216
D +CLPPS ET + +KE N ++ S E
Sbjct: 357 DMQCLPPSYETMGPCEKEMKEETNEVEIASIE 388
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 4.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 348 YWESIPRSSCYFCSV 392
YW+SIP+ C +C +
Sbjct: 4 YWKSIPKYYCKYCQI 18
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 383 KIAATSWNGFPITSRRPCATFHLVDSKCLPPSSETPQLSKSCLKEFLNNLQPCSDE 216
K+ + SW +T+ + + L + SETP + +K+FLN DE
Sbjct: 62 KLPSKSWVSSTVTNEKLRESRRLALQAYVQCLSETPWIKMPVVKKFLNIKDESEDE 117
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 31 VTNTGTGQHSLFLYLFIKFPFIISRGVLILLVLRNQIVHVRFS---LRELHFIH 183
+T G QH+ F Y F+ ++ + + R + H S L E+ F H
Sbjct: 118 ITVLGWSQHTSFFYAFLNIRTLVCGITIFTEIARYSMYHSTLSVEKLDEMRFAH 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,453
Number of Sequences: 5004
Number of extensions: 47595
Number of successful extensions: 158
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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