Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15p22
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.58 
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    28   1.3  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    28   1.8  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   3.1  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   4.1  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    26   7.1  

>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 21/70 (30%), Positives = 37/70 (52%)
 Frame = -3

Query: 636 VKVYSEYQDEKYDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPCVERIIIILH 457
           V+ Y+ Y+   + + TK   T  VDS+H++   + S+    LL   Q  P +E+I  IL 
Sbjct: 46  VQEYTGYKGVTFIVSTKWNLT--VDSIHKLIPEIKSSPSACLLLVNQPYPVIEKITDILT 103

Query: 456 KDCMAHSSKL 427
           K  + +++ L
Sbjct: 104 KHGITNANLL 113


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = -3

Query: 765 DDINVNTLPLLFALLEDEKNVINFHIYEHQEELWKEAFKNKSNVKVYSEYQD 610
           +DI ++++P +  LL D  + I +++  H+E + K   +  +  +VY  ++D
Sbjct: 333 EDIEIDSIPAVRRLLGDVMSDIPYYMSHHKESIIKSVIREAN--RVYHLWKD 382


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = -3

Query: 714 EKNVINFHIYEHQEELWKEAFKNKSNVKVYSEYQDEKYD-----IYTKI-PCTMIVDSVH 553
           + + ++ HIY +    + E  +N SNVKV + YQ+  ++     IY K+    +++  +H
Sbjct: 150 QSSPVHTHIYFNGGGSFLET-ENYSNVKVVARYQETDFEKSAAIIYVKVGKGNVVLTGIH 208

Query: 552 QMFYSLGS 529
             F + GS
Sbjct: 209 PEFSAEGS 216


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/80 (25%), Positives = 36/80 (45%)
 Frame = -3

Query: 732 FALLEDEKNVINFHIYEHQEELWKEAFKNKSNVKVYSEYQDEKYDIYTKIPCTMIVDSVH 553
           F +L D  + I+  + E  +E +K  +  +SN+ + +   +E YD    IP   +V  + 
Sbjct: 19  FMILFDPSSSISL-LKEKVQETYKSLYPFESNINIRNIKNEESYD----IPNEYLVGEIF 73

Query: 552 QMFYSLGSNKFMKLLKRLQG 493
                +    F   LK+L G
Sbjct: 74  PTNSKVIVESFSSPLKKLDG 93


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 735 LFALLEDEKNVINFH----IYEHQEELWKEAFKNKSNVKVYSEYQDEKY 601
           L ALL++++  +  H    IYE  ++LW E   + + ++V   Y+D  +
Sbjct: 18  LMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVM--YEDHSF 64


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 708 NVINFHIYEHQEELWKEAFKNKSNVK 631
           +VINF IYE  E LW + F +   ++
Sbjct: 137 SVINF-IYEKNERLWSDPFVSSQRLR 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,806
Number of Sequences: 5004
Number of extensions: 56835
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)