Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15p21
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.81 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.5  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   10.0 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   10.0 

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  SSKNCIQNILTSSSYNFYCFHPCLDIDYC 123
           S K  + N+L S+ Y+     P  D D+C
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQDADFC 88


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 288 IENSKYLKYSNYFNDSEIWYIHTSVA 211
           +EN+  LK +  F D   W+ ++ V+
Sbjct: 481 VENACVLKNTEIFKDKSDWFDYSEVS 506


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 527 FKLLMPRCC 501
           FKL++P CC
Sbjct: 359 FKLMLPNCC 367


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 100 PCLDIDYCQRI 132
           P LDIDY QR+
Sbjct: 54  PSLDIDYKQRV 64


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 789 NGDPRYEINYIIQSTQRDERVITI 718
           +GD  Y +NY++ + Q  ++   I
Sbjct: 54  SGDYNYTMNYLLDTDQWGDKTFVI 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,677
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)