Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15p19
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...   111   1e-26
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    83   4e-18
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    73   4e-15
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           28   0.12 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score =  111 bits (266), Expect = 1e-26
 Identities = 63/211 (29%), Positives = 108/211 (51%)
 Frame = -2

Query: 685 LLGQEKMNPEDIATVIMDMLLIGVNTITSSTSFLLYYLAKYQKAQKILYKEIQENFPEQK 506
           +L Q+ ++  D    I+D +  G++T+ ++  FL   + +    Q  LY+E     P   
Sbjct: 309 ILRQKNLDIRDKKAAIVDFIAAGIHTLGNTLVFLFDLIGRNPTVQNKLYEETYALAPAGC 368

Query: 505 IMDLTKIREQTPYLQACIKETLRLTPPIPVLTRILPKNITLDKYNIPRGTLIIMSTQDAS 326
            + +  +R+   YL+ACI E+LRL P    + RIL + I L  Y +  GT++++ T  A 
Sbjct: 369 DLTIDNLRK-AKYLRACITESLRLIPTTTCIARILDEPIELSGYRLTAGTVVLLHTWIAG 427

Query: 325 LKESNYDDANTFCPERWLKSDSNEYHLFASIPFGYGARKCLGQNIAETMMSLLTVKLLQK 146
           L E N+ DA  + PERW    +    L  + PFG G R C G+   +  + L+  K++++
Sbjct: 428 LNEENFKDAKKYLPERWTTPTTPHSPLLVA-PFGAGRRICPGKRFVDLALQLILAKIIRE 486

Query: 145 YKLEYHYGDLEPTRSFIARPKRALKLRFIDR 53
           +++     +L+    FI  PK  + L F DR
Sbjct: 487 FEIIVE-EELDLQFEFILAPKGPVSLGFRDR 516


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 82.6 bits (195), Expect = 4e-18
 Identities = 46/188 (24%), Positives = 95/188 (50%), Gaps = 2/188 (1%)
 Frame = -2

Query: 694 NAMLLGQEKMNPEDIATVIMDMLLIGVNTITSSTSFLLYYLAKYQKAQKILYKEIQENFP 515
           N +LL  +++  E + T++ +    G +T  S +SF L  +  +   Q+ + +E+ E F 
Sbjct: 329 NGVLLTDKEVK-EQVDTIMFE----GHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFG 383

Query: 514 EQKIMDLTKIREQTPYLQACIKETLRLTPPIPVLTRILPKNITLDK--YNIPRGTLIIMS 341
           +       +   +  YL+ C+ ETLR+ PP+P++ R +  ++ L    Y IP G  +++ 
Sbjct: 384 DSDRPATFQDTLEMKYLERCLLETLRMYPPVPLIAREIKTDLKLASGDYTIPAGCTVVIG 443

Query: 340 TQDASLKESNYDDANTFCPERWLKSDSNEYHLFASIPFGYGARKCLGQNIAETMMSLLTV 161
           T     +   Y + + F P+ +L   +   H +A +PF  G R C+G+  A   + ++  
Sbjct: 444 TFKLHRQPHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLKLKIVLS 503

Query: 160 KLLQKYKL 137
            +L+ +++
Sbjct: 504 TILRNFRV 511


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 72.5 bits (170), Expect = 4e-15
 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 7/217 (3%)
 Frame = -2

Query: 694 NAMLLGQEKMNPEDIATVIMDMLLIGVNTITSSTSFLLYYLAKYQKAQKILYKEIQENFP 515
           N   L   K+    IA       L G  T +++ S  LY LA  Q  QK L +EI    P
Sbjct: 280 NPQKLENIKLTDSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKKLREEINTFCP 339

Query: 514 EQ-KIMDLTKIREQTPYLQACIKETLRLTPPIPVLTRILPKNITLD--KYNIPRGTLIIM 344
           +  K +    I+E   YL    KETLR+ PP  +L R    + T +  K  IP+   I +
Sbjct: 340 KNNKELKYDDIKEME-YLDKVFKETLRMYPPASILMRKAISDYTFNDTKITIPKEMKIWI 398

Query: 343 STQDASLKESNYDDANTFCPERWLKSDSNEYHLFASIPFGYGARKCLGQNIAETMMSLLT 164
                    + Y + ++F PER+ +      H    +PFG G R C+G   A     +  
Sbjct: 399 PAFAIHRDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIGARFAVYQTKVGL 458

Query: 163 VKLLQKYKLEYHYGDLEPTR----SFIARPKRALKLR 65
           + +L+ +K+E     + P      +F+  PK  + L+
Sbjct: 459 ITILRNHKVEVCEKTIIPYEFDPGAFLLSPKDGIYLK 495


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 653 YSNRHYGHVADWSQYDYFFNIISFILFSEIPKSSENTL*RDPRKFS*AENYGFN 492
           Y+N  YG   D    DYF       L S +P  + N L  D    +  E+ GFN
Sbjct: 86  YNNHLYGSTPD--SRDYFSRPFEKRLHSRLPGRNFNLLRADANSVNELESQGFN 137


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 449 RNIKINTSNSSAYKNIAEKYNS 384
           +  KI +SN+  YKN    YNS
Sbjct: 299 KETKIISSNNYNYKNYNNNYNS 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 449 RNIKINTSNSSAYKNIAEKYNS 384
           +  KI +SN+  YKN    YNS
Sbjct: 310 KETKIISSNNYNYKNYNNNYNS 331


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 368  STWNFNYHVYPRCIIKR 318
            STW ++++V   C I R
Sbjct: 1675 STWGYHHNVNKHCTIHR 1691


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 772 SWRPEQAISYKAKEIEEQYPNSNIL 698
           SW   +A    A++++++ PNS IL
Sbjct: 155 SWHSPEAHISVAQKLQKEIPNSIIL 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,804
Number of Sequences: 438
Number of extensions: 5841
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)