Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15p14
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    41   2e-04
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   6.6  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -3

Query: 517 EEMCRICH--GA-EXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYHTQRVH 347
           +E+CR+C   GA +  L   C+   +   VH  CL  WL  + K+ CE   A++   +V+
Sbjct: 5   DEICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVY 64

Query: 346 RYGLARAM 323
              + R +
Sbjct: 65  SESMPRTI 72


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = +2

Query: 131 LWLMQASTKVDASGQGVRRGSCAISEESVRPDSHAASTXSGDXSAXXXXSTSNCFALWLR 310
           LW  Q STK      G ++    ++  S  PD    +T S D S       +  F   LR
Sbjct: 372 LWDPQKSTKPITKMHGHQK---VVNHASFSPDGRCIATASFDSSVRLWDGKTGKFLATLR 428

Query: 311 SH 316
            H
Sbjct: 429 GH 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,092
Number of Sequences: 5004
Number of extensions: 27143
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)