Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15p14
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    33   0.18 
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168...    32   0.42 
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573...    31   0.98 
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    31   1.3  
05_05_0064 + 22063951-22064462,22066344-22066566                       31   1.3  
01_06_1646 - 38887178-38887271,38888230-38888270,38888744-388888...    30   1.7  
05_07_0040 + 27243195-27243428,27243665-27243736,27243837-272439...    29   3.0  
05_02_0096 - 6568030-6568252,6570998-6571281                           29   3.9  
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456...    28   6.9  

>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = -3

Query: 517 EEMCRICH---GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
           EE CRIC     A   L   C  R +   VH  CL  WL     S CE
Sbjct: 27  EEQCRICRVPAEAGRPLRHPCACRGSIRFVHDDCLLRWLATRRTSHCE 74


>02_01_0256 +
           1680240-1680485,1680950-1681024,1681527-1681776,
           1681910-1681995,1682669-1682771,1683490-1683602,
           1684259-1684351
          Length = 321

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
 Frame = -3

Query: 685 EXAXVASSVTLNGESETNCKQNDXLVSQHRIKVRSXXRCAPTIDDTEQAEGRSLXAEEMC 506
           + A V +S  +  ES T     + LVS   IK         TID  E+     +     C
Sbjct: 126 DCAEVPASQQIVSESSTAGSSTEHLVSCE-IKPLGVDEDIETIDANEETH-LVIQDCPQC 183

Query: 505 RICHGAEXX-LXXXCRXRXTXGXVHVRCLEXW 413
           RIC   E   L   C  + T   VH  CL+ W
Sbjct: 184 RICLDNEGDDLIAPCHCKGTQKYVHRSCLDNW 215


>10_06_0130 -
           11055305-11055593,11055666-11055949,11057271-11057398,
           11058522-11058606,11058917-11060872
          Length = 913

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 359 PAGSPLWLGEGHVWCGSSATARNSCWWT 276
           P  +P  L EG  WC S A  +N  WW+
Sbjct: 780 PTPTPSRLAEGLRWCPSCALHQNEFWWS 807


>06_03_0875 -
           25584789-25585307,25585424-25585570,25585734-25585897,
           25586015-25586172,25586536-25586904,25586998-25587209,
           25587439-25588059,25588561-25588699,25588968-25589044,
           25589120-25589800,25590641-25590889
          Length = 1111

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = -3

Query: 556 DDTEQAEGRSLXAEEMCRICHGA---EXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXC 386
           +D E+ EG      ++CRIC      E  L   C    +   VH  CL  WL  +    C
Sbjct: 29  EDEEEEEG------DVCRICRNPGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQC 82

Query: 385 E 383
           E
Sbjct: 83  E 83


>05_05_0064 + 22063951-22064462,22066344-22066566
          Length = 244

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
 Frame = -3

Query: 670 ASSVTLNGESETNCKQNDXLVSQHRIKVRSXXRCAPTIDDTEQA-----EGRSLXAEEMC 506
           ASS     E E +       V  HR K      C+    D E       +G    AE  C
Sbjct: 66  ASSYDGEAEEEEDAGGGGGGVEHHRRKSSCVSECSLDDVDLEAGLAEVIKGSPEKAERCC 125

Query: 505 RICH-GAE-------XXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
           RICH G E         +   C  +      H +C E W        CE
Sbjct: 126 RICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICE 174


>01_06_1646 -
           38887178-38887271,38888230-38888270,38888744-38888827,
           38888933-38889080,38889232-38889299,38889563-38889634,
           38890479-38890673
          Length = 233

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = -3

Query: 508 CRICH--GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
           CRIC   G E  +   C    T    H +C++ W  +     CE     Y
Sbjct: 42  CRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVY 91


>05_07_0040 +
           27243195-27243428,27243665-27243736,27243837-27243904,
           27243987-27244113,27244514-27244669
          Length = 218

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -3

Query: 508 CRICHGAEXX--LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
           CRIC   +    +   C  R +    H +C++ W  E   + CE    +Y
Sbjct: 55  CRICQEEDDQTYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQQY 104


>05_02_0096 - 6568030-6568252,6570998-6571281
          Length = 168

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
 Frame = -3

Query: 571 CAPTIDDTEQAEGRSLXAEEMCRICH-------------GAEXXLXXXCRXRXTXGXVHV 431
           CA   DD +    RS      CRICH             G+   +   C  R      H 
Sbjct: 27  CAAAADDDD----RSRRPSTGCRICHLGGGGDGEMAAESGSGRLVRLGCGCRGELAAAHR 82

Query: 430 RCLEXWLTEAXKSXCEXXG 374
           RC E W +      CE  G
Sbjct: 83  RCAEAWFSVRGNRRCEICG 101


>02_01_0611 -
           4567839-4568144,4568280-4569209,4569301-4569566,
           4569662-4569970,4570497-4570647,4570958-4571012,
           4571137-4571512,4571560-4571797,4571878-4572096,
           4572629-4572910
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 408 PRRXSRXAXSXGRATTPSGFTVMAWRGPCXVWLLSHSAKQLLVD 277
           P + +R + S     TP  FT MAW G       +  +KQ +V+
Sbjct: 81  PTQAARYSTSSSSQITPGEFTEMAWEGVVGAVDAARMSKQQVVE 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,195
Number of Sequences: 37544
Number of extensions: 251582
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)