Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15p14
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC047569-1|AAH47569.1| 253|Homo sapiens membrane-associated rin... 52 2e-06
BC111388-1|AAI11389.1| 246|Homo sapiens membrane-associated rin... 43 0.001
BC032624-1|AAH32624.1| 246|Homo sapiens MARCH2 protein protein. 43 0.001
BC015910-1|AAH15910.1| 239|Homo sapiens MARCH2 protein protein. 43 0.001
AB197929-1|BAD89359.1| 246|Homo sapiens membrane-associated RIN... 43 0.001
AK000675-1|BAA91319.1| 272|Homo sapiens protein ( Homo sapiens ... 38 0.051
BC066988-1|AAH66988.1| 291|Homo sapiens membrane-associated rin... 35 0.36
BC025394-1|AAH25394.1| 291|Homo sapiens membrane-associated rin... 35 0.36
AL731567-2|CAI41244.1| 291|Homo sapiens membrane-associated rin... 35 0.36
AL512595-1|CAI12414.1| 291|Homo sapiens membrane-associated rin... 35 0.36
BC142694-1|AAI42695.1| 910|Homo sapiens membrane-associated rin... 34 0.47
BC142679-1|AAI42680.1| 910|Homo sapiens membrane-associated rin... 34 0.47
AB011169-1|BAA25523.1| 971|Homo sapiens KIAA0597 protein protein. 34 0.47
AL731567-4|CAI41247.1| 455|Homo sapiens membrane-associated rin... 33 0.83
BC098448-1|AAH98448.1| 410|Homo sapiens membrane-associated rin... 32 1.9
BC048793-1|AAH48793.1| 357|Homo sapiens MARCH4 protein protein. 32 1.9
AB037820-1|BAA92637.1| 452|Homo sapiens KIAA1399 protein protein. 32 1.9
L42379-1|AAA89173.1| 793|Homo sapiens bone-derived growth facto... 31 5.8
>BC047569-1|AAH47569.1| 253|Homo sapiens membrane-associated ring
finger (C3HC4) 3 protein.
Length = 253
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -3
Query: 511 MCRICH--GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYHTQRVHRYG 338
MCRICH ++ L C T G +H CLE WL+ + S CE R+ +R R
Sbjct: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPR-P 128
Query: 337 LARAMXGVAPQPQRETVAG 281
L + PQ ++ T+ G
Sbjct: 129 LVEWLRNPGPQHEKRTLFG 147
>BC111388-1|AAI11389.1| 246|Homo sapiens membrane-associated ring
finger (C3HC4) 2 protein.
Length = 246
Score = 43.2 bits (97), Expect = 0.001
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 508 CRICH-GAEXX-LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYHTQRVHRYGL 335
CRICH GA L C T G VH CLE WL+ + S CE + ++ R L
Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR-PL 122
Query: 334 ARAMXGVAPQPQRETV 287
+ P+ ++ T+
Sbjct: 123 TEWLKDPGPRTEKRTL 138
>BC032624-1|AAH32624.1| 246|Homo sapiens MARCH2 protein protein.
Length = 246
Score = 43.2 bits (97), Expect = 0.001
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 508 CRICH-GAEXX-LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYHTQRVHRYGL 335
CRICH GA L C T G VH CLE WL+ + S CE + ++ R L
Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR-PL 122
Query: 334 ARAMXGVAPQPQRETV 287
+ P+ ++ T+
Sbjct: 123 TEWLKDPGPRTEKRTL 138
>BC015910-1|AAH15910.1| 239|Homo sapiens MARCH2 protein protein.
Length = 239
Score = 43.2 bits (97), Expect = 0.001
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 508 CRICH-GAEXX-LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYHTQRVHRYGL 335
CRICH GA L C T G VH CLE WL+ + S CE + ++ R L
Sbjct: 57 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR-PL 115
Query: 334 ARAMXGVAPQPQRETV 287
+ P+ ++ T+
Sbjct: 116 TEWLKDPGPRTEKRTL 131
>AB197929-1|BAD89359.1| 246|Homo sapiens membrane-associated
RING-CH family member 2 protein.
Length = 246
Score = 43.2 bits (97), Expect = 0.001
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 508 CRICH-GAEXX-LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYHTQRVHRYGL 335
CRICH GA L C T G VH CLE WL+ + S CE + ++ R L
Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPR-PL 122
Query: 334 ARAMXGVAPQPQRETV 287
+ P+ ++ T+
Sbjct: 123 TEWLKDPGPRTEKRTL 138
>AK000675-1|BAA91319.1| 272|Homo sapiens protein ( Homo sapiens
cDNA FLJ20668 fis, clone KAIA585. ).
Length = 272
Score = 37.5 bits (83), Expect = 0.051
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -3
Query: 517 EEMCRICH---GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
+++CRICH E L CR T VH CL W+ + CE
Sbjct: 60 QDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCE 107
>BC066988-1|AAH66988.1| 291|Homo sapiens membrane-associated ring
finger (C3HC4) 8 protein.
Length = 291
Score = 34.7 bits (76), Expect = 0.36
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 520 AEEMCRICH---GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
++++CRICH E L C + VH CL+ W+ + CE
Sbjct: 76 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCE 124
>BC025394-1|AAH25394.1| 291|Homo sapiens membrane-associated ring
finger (C3HC4) 8 protein.
Length = 291
Score = 34.7 bits (76), Expect = 0.36
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 520 AEEMCRICH---GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
++++CRICH E L C + VH CL+ W+ + CE
Sbjct: 76 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCE 124
>AL731567-2|CAI41244.1| 291|Homo sapiens membrane-associated ring
finger (C3HC4) 8 protein.
Length = 291
Score = 34.7 bits (76), Expect = 0.36
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 520 AEEMCRICH---GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
++++CRICH E L C + VH CL+ W+ + CE
Sbjct: 76 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCE 124
>AL512595-1|CAI12414.1| 291|Homo sapiens membrane-associated ring
finger (C3HC4) 8 protein.
Length = 291
Score = 34.7 bits (76), Expect = 0.36
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 520 AEEMCRICH---GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
++++CRICH E L C + VH CL+ W+ + CE
Sbjct: 76 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCE 124
>BC142694-1|AAI42695.1| 910|Homo sapiens membrane-associated ring
finger (C3HC4) 6 protein.
Length = 910
Score = 34.3 bits (75), Expect = 0.47
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 517 EEMCRICHGA---EXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
E++CR+C E L C + +H CL WL + K CE R+
Sbjct: 6 EDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
>BC142679-1|AAI42680.1| 910|Homo sapiens membrane-associated ring
finger (C3HC4) 6 protein.
Length = 910
Score = 34.3 bits (75), Expect = 0.47
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 517 EEMCRICHGA---EXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
E++CR+C E L C + +H CL WL + K CE R+
Sbjct: 6 EDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
>AB011169-1|BAA25523.1| 971|Homo sapiens KIAA0597 protein protein.
Length = 971
Score = 34.3 bits (75), Expect = 0.47
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 517 EEMCRICHGA---EXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
E++CR+C E L C + +H CL WL + K CE R+
Sbjct: 67 EDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 120
>AL731567-4|CAI41247.1| 455|Homo sapiens membrane-associated ring
finger (C3HC4) 8 protein.
Length = 455
Score = 33.5 bits (73), Expect = 0.83
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -3
Query: 514 EMCRICH---GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
++CRICH E L C + VH CL+ W+ + CE
Sbjct: 242 DVCRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCE 288
>BC098448-1|AAH98448.1| 410|Homo sapiens membrane-associated ring
finger (C3HC4) 4 protein.
Length = 410
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 511 MCRIC-HGAEXX-LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYH 362
+CRIC G E L CR + H CL W++E CE +YH
Sbjct: 162 LCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH 213
>BC048793-1|AAH48793.1| 357|Homo sapiens MARCH4 protein protein.
Length = 357
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 511 MCRIC-HGAEXX-LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYH 362
+CRIC G E L CR + H CL W++E CE +YH
Sbjct: 109 LCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH 160
>AB037820-1|BAA92637.1| 452|Homo sapiens KIAA1399 protein protein.
Length = 452
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 511 MCRIC-HGAEXX-LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYH 362
+CRIC G E L CR + H CL W++E CE +YH
Sbjct: 204 LCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH 255
>L42379-1|AAA89173.1| 793|Homo sapiens bone-derived growth factor
protein.
Length = 793
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 434 RALSGAVAHRGXQVALRXLWGALPHPAGSPLWLGEG 327
R SGA+ G A W PAG P W G G
Sbjct: 660 RTASGALWRSGAWAAAPSSWSTSLRPAGGPSWTGRG 695
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,493,057
Number of Sequences: 237096
Number of extensions: 1294430
Number of successful extensions: 2834
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2830
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -