Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15p14
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    49   3e-06
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    42   4e-04
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    36   0.041
Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical ...    29   3.5  

>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 511 MCRICHGAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARYHTQRVHRYGLA 332
           MCR+C G E  L   C    +   VH  CL  WL  + K  CE    +Y  Q ++R  + 
Sbjct: 52  MCRVCRGNEGSLYYPCLCTGSIKYVHQECLVEWLKYSKKEVCELCNHKYSFQPIYRQDMP 111

Query: 331 RAM 323
           +A+
Sbjct: 112 KAL 114


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 541 AEGRSLXAEEMCRICHGAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
           +E  +  +  +CRIC   E  +   C    T G VH  CL  W+  + K  CE   + Y
Sbjct: 41  SESTTSGSRRICRICQMHEGDMVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEY 99


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 541 AEGRSLXAEEMCRICHGAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
           +E  +  +  +CRIC   E  +   C    T G VH  CL  W+  + K  CE   + Y
Sbjct: 41  SESTTSGSRRICRICQMHEGDMVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEY 99


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 541 AEGRSLXAEEMCRICHGAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCEXXGARY 365
           +E  +  +  +CRIC   E  +   C    T G VH  CL  W+  + K  CE   + Y
Sbjct: 87  SESTTSGSRRICRICQMHEGDMVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEY 145


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = -3

Query: 517 EEMCRICH-----GAEXXLXXXCRXRXTXGXVHVRCLEXWLTEAXK-----SXCEXXGAR 368
           E +CRICH      +   L   CR   +   VHV CL  WL  + +     + CE    +
Sbjct: 191 EPLCRICHCCWPPDSNDPLISPCRCSGSLQYVHVSCLMHWLDISSRKLHRPAICELCLYK 250

Query: 367 YHTQRVHRY 341
           Y  +RV +Y
Sbjct: 251 YRRRRVLKY 259


>Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical
           protein M110.3 protein.
          Length = 189

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -3

Query: 544 QAEGRSLXAEEMCRICHGAEXX----LXXXCRXRXTXGXVHVRCLEXWLTEA 401
           + +G     E+ C+ C G E          CR R +   VH +CL  W ++A
Sbjct: 4   EIDGNEQETEKYCKFCFGTESDNALSFVHPCRCRGSIHWVHHQCLAMWFSKA 55


>Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical
           protein C17E4.3 protein.
          Length = 431

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 478 LXXXCRXRXTXGXVHVRCLEXWLTEAXKSXCE 383
           L   C+   T G  H  CLE WLT    + CE
Sbjct: 34  LISPCKCSGTMGLFHRSCLEHWLTLTSTTNCE 65


>AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical
           protein C53D5.2 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = -3

Query: 511 MCRICHGA----EXXLXXXCRXRXTXGXVHVRCLEXWL 410
           MCRICH +       L   CR   T   VH  C+  WL
Sbjct: 16  MCRICHTSTSTRSNPLISPCRCSGTLLFVHKACVVRWL 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,396
Number of Sequences: 27780
Number of extensions: 171393
Number of successful extensions: 299
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)