Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15p08
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.23
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516... 31 0.71
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.94
07_03_0846 - 21983581-21986055 29 2.2
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 2.2
03_05_0183 - 21681673-21682524 29 2.9
07_03_1086 + 23858419-23859423,23859527-23859610 29 3.8
02_02_0637 - 12491706-12492575,12492580-12492657 29 3.8
10_06_0009 + 9564100-9564119,9564482-9564539,9564674-9564727,956... 28 6.7
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 6.7
07_03_0626 + 20060013-20060273,20061017-20061274 27 8.8
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.8
01_01_1235 - 10017728-10017766,10018891-10019352 27 8.8
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 28 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 156
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>03_02_0034 -
5166987-5167010,5167596-5167659,5168071-5168174,
5168685-5168829,5168914-5169055,5169432-5169751,
5169895-5170196,5170603-5170647,5171218-5171268,
5171374-5171460,5171587-5171764,5172453-5172528,
5173018-5173234,5173604-5173909
Length = 686
Score = 31.1 bits (67), Expect = 0.71
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +1
Query: 7 RSTTPALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 186
R +PA+PS R+ R S T S T + +RS +A V+ K D+ +RR
Sbjct: 433 RPESPAIPSPELRRVRTSFTGASSWVATTAMGKVVRSANAPVEPKAKVEDVEK----QRR 488
Query: 187 VSRFECETRLVKSHCLEPPDS 249
+ C + + C PP S
Sbjct: 489 RGKGGCNGTVSSARCRSPPPS 509
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 296 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 162
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 154 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 303
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 383 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 285
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 595 SQAFIATLLFDPSMSALPIIAKQNSPS 515
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 443 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 279
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 278 GKDMLTVEPRESGGSK 231
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 10 STTPALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGL 177
ST+P+ +T PR+ R S + R + PDL++ +A + S LRD N L
Sbjct: 151 STSPSARATRPRRSRSSPVFGA--RGAAGIKPDLKAYNAAIAAYCKSDLLRDTNRL 204
>10_06_0009 +
9564100-9564119,9564482-9564539,9564674-9564727,
9564816-9564917,9565322-9565357
Length = 89
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 10 STTPALPSTTPRQERKSSTDYSEPRHRTELYPDLR 114
+T PALP+TTP + +T +E + P LR
Sbjct: 52 TTLPALPTTTPTRATAEATHRAEEASQDTKAPSLR 86
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 305 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 132
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 131 TRASR 117
TRA+R
Sbjct: 64 TRAAR 68
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 284 RLGWLRP*RRSGIIP 328
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 277 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 173
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 362 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 198
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 197 KRETRRRSPFGSRRS 153
K + RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,070
Number of Sequences: 37544
Number of extensions: 370535
Number of successful extensions: 1129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -