Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15p03
         (815 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456762-1|CAG33043.1|  655|Homo sapiens KATNB1 protein.               71   5e-12
BT007022-1|AAP35668.1|  655|Homo sapiens katanin p80 (WD40-conta...    71   5e-12
BC001353-1|AAH01353.1|  655|Homo sapiens katanin p80 (WD repeat ...    71   5e-12
AF052432-1|AAC09328.1|  655|Homo sapiens katanin p80 subunit pro...    71   5e-12

>CR456762-1|CAG33043.1|  655|Homo sapiens KATNB1 protein.
          Length = 655

 Score = 70.9 bits (166), Expect = 5e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = -3

Query: 774 QSKXESXMQCGCNALRLIVRNFSSVVRANVSAPVRTLGVDIPREERYSKCMQXHRLLLDV 595
           QSK ES +Q GC +L+LI++ F  ++   ++AP  ++GVDI REER  KC   ++ L  +
Sbjct: 568 QSKYESYVQTGCTSLKLILQRFLPLITDMLAAPP-SVGVDISREERLHKCRLCYKQLKSI 626

Query: 594 RAFLLKRQTLQGRLGAAFRDLHTLM 520
              +  +  L GR G+ FR+LH LM
Sbjct: 627 SGLVKSKSGLSGRHGSTFRELHLLM 651


>BT007022-1|AAP35668.1|  655|Homo sapiens katanin p80
           (WD40-containing) subunit B 1 protein.
          Length = 655

 Score = 70.9 bits (166), Expect = 5e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = -3

Query: 774 QSKXESXMQCGCNALRLIVRNFSSVVRANVSAPVRTLGVDIPREERYSKCMQXHRLLLDV 595
           QSK ES +Q GC +L+LI++ F  ++   ++AP  ++GVDI REER  KC   ++ L  +
Sbjct: 568 QSKYESYVQTGCTSLKLILQRFLPLITDMLAAPP-SVGVDISREERLHKCRLCYKQLKSI 626

Query: 594 RAFLLKRQTLQGRLGAAFRDLHTLM 520
              +  +  L GR G+ FR+LH LM
Sbjct: 627 SGLVKSKSGLSGRHGSTFRELHLLM 651


>BC001353-1|AAH01353.1|  655|Homo sapiens katanin p80 (WD repeat
           containing) subunit B 1 protein.
          Length = 655

 Score = 70.9 bits (166), Expect = 5e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = -3

Query: 774 QSKXESXMQCGCNALRLIVRNFSSVVRANVSAPVRTLGVDIPREERYSKCMQXHRLLLDV 595
           QSK ES +Q GC +L+LI++ F  ++   ++AP  ++GVDI REER  KC   ++ L  +
Sbjct: 568 QSKYESYVQTGCTSLKLILQRFLPLITDMLAAPP-SVGVDISREERLHKCRLCYKQLKSI 626

Query: 594 RAFLLKRQTLQGRLGAAFRDLHTLM 520
              +  +  L GR G+ FR+LH LM
Sbjct: 627 SGLVKSKSGLSGRHGSTFRELHLLM 651


>AF052432-1|AAC09328.1|  655|Homo sapiens katanin p80 subunit
           protein.
          Length = 655

 Score = 70.9 bits (166), Expect = 5e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%)
 Frame = -3

Query: 774 QSKXESXMQCGCNALRLIVRNFSSVVRANVSAPVRTLGVDIPREERYSKCMQXHRLLLDV 595
           QSK ES +Q GC +L+LI++ F  ++   ++AP  ++GVDI REER  KC   ++ L  +
Sbjct: 568 QSKYESYVQTGCTSLKLILQRFLPLITDMLAAPP-SVGVDISREERLHKCRLCYKQLKSI 626

Query: 594 RAFLLKRQTLQGRLGAAFRDLHTLM 520
              +  +  L GR G+ FR+LH LM
Sbjct: 627 SGLVKSKSGLSGRHGSTFRELHLLM 651


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,080,048
Number of Sequences: 237096
Number of extensions: 1095699
Number of successful extensions: 1385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)