Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o24
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.93 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.6  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +3

Query: 375 DVTKVLSELTEFNHTCE*KS------FEQNVFKFIVLFCINLSDY*RETA*LSLCQSCG* 536
           +VT + S++  F   C   +        QN+++    FC  L  Y  ET   + C +CG 
Sbjct: 489 EVTMLFSDIVGFTEICSTATPMMVINMLQNLYEQFDSFCGQLDVYKVETIGDAYCVACGL 548

Query: 537 H 539
           H
Sbjct: 549 H 549


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 5   EKPVLCKEYYTVLKNSESEILQSNFDEL 88
           E  V C+E   +LKN++S++L  + D +
Sbjct: 385 ENTVTCQEAMHMLKNADSQLLVISDDNI 412


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 KFNQNITLIGHFCDDIYYDRNFXDYLXV 84
           K+N N     + C  +YY+ N+ + + V
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPV 124


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 KFNQNITLIGHFCDDIYYDRNFXDYLXV 84
           K+N N     + C  +YY+ N+ + + +
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 KFNQNITLIGHFCDDIYYDRNFXDYLXV 84
           K+N N     + C  +YY+ N+ + + +
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 167 KFNQNITLIGHFCDDIYYDRNFXDYLXV 84
           K+N N     + C  +YY+ N+ + + +
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,763
Number of Sequences: 438
Number of extensions: 2818
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)