Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15o19
(790 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J02943-1|AAB59523.1| 405|Homo sapiens CBG protein. 41 0.004
BC058021-1|AAH58021.1| 405|Homo sapiens serpin peptidase inhibi... 40 0.010
BC056259-1|AAH56259.1| 405|Homo sapiens serpin peptidase inhibi... 40 0.010
BC040857-1|AAH40857.1| 414|Homo sapiens serpin peptidase inhibi... 36 0.22
AY326420-1|AAP88384.1| 414|Homo sapiens visceral adipose-specif... 36 0.22
AY177692-1|AAO18649.1| 414|Homo sapiens OL-64 protein. 36 0.22
U35459-1|AAC50282.1| 397|Homo sapiens bomapin protein. 32 2.7
BC096220-1|AAH96220.1| 397|Homo sapiens serpin peptidase inhibi... 32 2.7
BC096219-1|AAH96219.1| 397|Homo sapiens serpin peptidase inhibi... 32 2.7
BC096217-1|AAH96217.1| 397|Homo sapiens serpin peptidase inhibi... 32 2.7
BC096218-1|AAH96218.1| 397|Homo sapiens serpin peptidase inhibi... 31 3.6
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 30 8.3
AY091460-1|AAM12030.1| 387|Homo sapiens RNA polymerase III subu... 30 8.3
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 30 8.3
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 30 8.3
>J02943-1|AAB59523.1| 405|Homo sapiens CBG protein.
Length = 405
Score = 41.1 bits (92), Expect = 0.004
Identities = 40/185 (21%), Positives = 78/185 (42%)
Frame = -2
Query: 684 DFYLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFTLFAILPDEVNGLYKLT 505
+FY++ VK P ++ + + Y SE Q + ++ G T+F ILPD+ K+
Sbjct: 220 NFYVDETTVVKVPMMLQSSTISYLHDSELPCQLVQMNYVGNG-TVFFILPDK----GKMN 274
Query: 504 QKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKIQDLDILFDKKRAQLC 325
+L D N+ S L V+L +P I D+ + L+++ D+ +A
Sbjct: 275 TVIAALSRDTINRWSAGLTSSQVDLYIPKVTISGVYDLGDVLEEMGIADLF--TNQANFS 332
Query: 324 GVTNNCEPGVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDKLITVEINRPFAF 145
+T + + L + +V K + + + + V K I + N+PF
Sbjct: 333 RITQDAQ-------LKSSKVVHKAVLQLNEEGVDTAGSTGVTLNLTSKPIILRFNQPFII 385
Query: 144 SVINN 130
+ ++
Sbjct: 386 MIFDH 390
>BC058021-1|AAH58021.1| 405|Homo sapiens serpin peptidase
inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), memb protein.
Length = 405
Score = 39.9 bits (89), Expect = 0.010
Identities = 39/185 (21%), Positives = 78/185 (42%)
Frame = -2
Query: 684 DFYLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFTLFAILPDEVNGLYKLT 505
+FY++ VK P ++ + + Y +E Q + ++ G T+F ILPD+ K+
Sbjct: 220 NFYVDETTVVKVPMMLQSSTISYLHDAELPCQLVQMNYVGNG-TVFFILPDK----GKMN 274
Query: 504 QKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKIQDLDILFDKKRAQLC 325
+L D N+ S L V+L +P I D+ + L+++ D+ +A
Sbjct: 275 TVIAALSRDTINRWSAGLTSSQVDLYIPKVTISGVYDLGDVLEEMGIADLF--TNQANFS 332
Query: 324 GVTNNCEPGVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDKLITVEINRPFAF 145
+T + + L + +V K + + + + V K I + N+PF
Sbjct: 333 RITQDAQ-------LKSSKVVHKAVLQLNEEGVDTAGSTGVTLNLTSKPIILRFNQPFII 385
Query: 144 SVINN 130
+ ++
Sbjct: 386 MIFDH 390
>BC056259-1|AAH56259.1| 405|Homo sapiens serpin peptidase
inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), memb protein.
Length = 405
Score = 39.9 bits (89), Expect = 0.010
Identities = 39/185 (21%), Positives = 78/185 (42%)
Frame = -2
Query: 684 DFYLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFTLFAILPDEVNGLYKLT 505
+FY++ VK P ++ + + Y +E Q + ++ G T+F ILPD+ K+
Sbjct: 220 NFYVDETTVVKVPMMLQSSTISYLHDAELPCQLVQMNYVGNG-TVFFILPDK----GKMN 274
Query: 504 QKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKIQDLDILFDKKRAQLC 325
+L D N+ S L V+L +P I D+ + L+++ D+ +A
Sbjct: 275 TVIAALSRDTINRWSAGLTSSQVDLYIPKVTISGVYDLGDVLEEMGIADLF--TNQANFS 332
Query: 324 GVTNNCEPGVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDKLITVEINRPFAF 145
+T + + L + +V K + + + + V K I + N+PF
Sbjct: 333 RITQDAQ-------LKSSKVVHKAVLQLNEEGVDTAGSTGVTLNLTSKPIILRFNQPFII 385
Query: 144 SVINN 130
+ ++
Sbjct: 386 MIFDH 390
>BC040857-1|AAH40857.1| 414|Homo sapiens serpin peptidase
inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), memb protein.
Length = 414
Score = 35.5 bits (78), Expect = 0.22
Identities = 27/113 (23%), Positives = 46/113 (40%)
Frame = -2
Query: 708 NPTKVKTMDFYLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFTLFAILPDE 529
+P K DF+L VK P + I + + + I + + T ILPDE
Sbjct: 219 DPNVTKEEDFFLEKNSSVKVPMMFRSGIYQVGYDDKLSCTILEIPYQ-KNITAIFILPDE 277
Query: 528 VNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKI 370
KL K L+ D +++ L + V++ +P + D+ + L I
Sbjct: 278 ----GKLKHLEKGLQVDTFSRWKTLLSRRVVDVSVPRLHMTGTFDLKKTLSYI 326
>AY326420-1|AAP88384.1| 414|Homo sapiens visceral adipose-specific
SERPIN protein.
Length = 414
Score = 35.5 bits (78), Expect = 0.22
Identities = 27/113 (23%), Positives = 46/113 (40%)
Frame = -2
Query: 708 NPTKVKTMDFYLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFTLFAILPDE 529
+P K DF+L VK P + I + + + I + + T ILPDE
Sbjct: 219 DPNVTKEEDFFLEKNSSVKVPMMFRSGIYQVGYDDKLSCTILEIPYQ-KNITAIFILPDE 277
Query: 528 VNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKI 370
KL K L+ D +++ L + V++ +P + D+ + L I
Sbjct: 278 ----GKLKHLEKGLQVDTFSRWKTLLSRRVVDVSVPRLHMTGTFDLKKTLSYI 326
>AY177692-1|AAO18649.1| 414|Homo sapiens OL-64 protein.
Length = 414
Score = 35.5 bits (78), Expect = 0.22
Identities = 27/113 (23%), Positives = 46/113 (40%)
Frame = -2
Query: 708 NPTKVKTMDFYLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFTLFAILPDE 529
+P K DF+L VK P + I + + + I + + T ILPDE
Sbjct: 219 DPNVTKEEDFFLEKNSSVKVPMMFRSGIYQVGYDDKLSCTILEIPYQ-KNITAIFILPDE 277
Query: 528 VNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKI 370
KL K L+ D +++ L + V++ +P + D+ + L I
Sbjct: 278 ----GKLKHLEKGLQVDTFSRWKTLLSRRVVDVSVPRLHMTGTFDLKKTLSYI 326
>U35459-1|AAC50282.1| 397|Homo sapiens bomapin protein.
Length = 397
Score = 31.9 bits (69), Expect = 2.7
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = -2
Query: 585 ISISLKGGDFTLFAILPDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQIL 406
+ + K D +L +LP+++NGL +L + K + + + +E V+L +P ++
Sbjct: 239 LQLYYKSRDLSLLILLPEDINGLEQLEKAITYEKLNEWTS-ADMMELYEVQLHLPKFKLE 297
Query: 405 TQGDITEALKKIQDLDILFDKKRAQLCGVTN 313
D+ L + D F + +A G+++
Sbjct: 298 DSYDLKSTLSSMGMSD-AFSQSKADFSGMSS 327
>BC096220-1|AAH96220.1| 397|Homo sapiens serpin peptidase
inhibitor, clade B (ovalbumin), member 10 protein.
Length = 397
Score = 31.9 bits (69), Expect = 2.7
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = -2
Query: 585 ISISLKGGDFTLFAILPDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQIL 406
+ + K D +L +LP+++NGL +L + K + + + +E V+L +P ++
Sbjct: 239 LQLYYKSRDLSLLILLPEDINGLEQLEKAITYEKLNEWTS-ADMMELYEVQLHLPKFKLE 297
Query: 405 TQGDITEALKKIQDLDILFDKKRAQLCGVTN 313
D+ L + D F + +A G+++
Sbjct: 298 DSYDLKSTLSSMGMSD-AFSQSKADFSGMSS 327
>BC096219-1|AAH96219.1| 397|Homo sapiens serpin peptidase
inhibitor, clade B (ovalbumin), member 10 protein.
Length = 397
Score = 31.9 bits (69), Expect = 2.7
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = -2
Query: 585 ISISLKGGDFTLFAILPDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQIL 406
+ + K D +L +LP+++NGL +L + K + + + +E V+L +P ++
Sbjct: 239 LQLYYKSRDLSLLILLPEDINGLEQLEKAITYEKLNEWTS-ADMMELYEVQLHLPKFKLE 297
Query: 405 TQGDITEALKKIQDLDILFDKKRAQLCGVTN 313
D+ L + D F + +A G+++
Sbjct: 298 DSYDLKSTLSSMGMSD-AFSQSKADFSGMSS 327
>BC096217-1|AAH96217.1| 397|Homo sapiens serpin peptidase
inhibitor, clade B (ovalbumin), member 10 protein.
Length = 397
Score = 31.9 bits (69), Expect = 2.7
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = -2
Query: 585 ISISLKGGDFTLFAILPDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQIL 406
+ + K D +L +LP+++NGL +L + K + + + +E V+L +P ++
Sbjct: 239 LQLYYKSRDLSLLILLPEDINGLEQLEKAITYEKLNEWTS-ADMMELYEVQLHLPKFKLE 297
Query: 405 TQGDITEALKKIQDLDILFDKKRAQLCGVTN 313
D+ L + D F + +A G+++
Sbjct: 298 DSYDLKSTLSSMGMSD-AFSQSKADFSGMSS 327
>BC096218-1|AAH96218.1| 397|Homo sapiens serpin peptidase
inhibitor, clade B (ovalbumin), member 10 protein.
Length = 397
Score = 31.5 bits (68), Expect = 3.6
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = -2
Query: 585 ISISLKGGDFTLFAILPDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQIL 406
+ + K D +L +LP+++NGL +L + K + + + +E V+L +P ++
Sbjct: 239 LQLYYKSCDLSLLILLPEDINGLEQLEKAITYEKLNEWTS-ADMMELYEVQLHLPKFKLE 297
Query: 405 TQGDITEALKKIQDLDILFDKKRAQLCGVTN 313
D+ L + D F + +A G+++
Sbjct: 298 DSYDLKSTLSSMGMSD-AFSQSKADFSGMSS 327
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 312 NCEP--GVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDKLITVEINRP 154
N EP I+ FLT YL+ +K+ FD K + + GKD+ I V + P
Sbjct: 534 NGEPLIAAIQDFLTGAYLLT--LKDTFFDRAKACQIIASILVGKDEKIKVRLPPP 586
>AY091460-1|AAM12030.1| 387|Homo sapiens RNA polymerase III subunit
RPC155-B protein.
Length = 387
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 312 NCEP--GVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDKLITVEINRP 154
N EP I+ FLT YL+ +K+ FD K + + GKD+ I V + P
Sbjct: 170 NGEPLIAAIQDFLTGAYLLT--LKDTFFDRAKACQIIASILVGKDEKIKVRLPPP 222
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 312 NCEP--GVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDKLITVEINRP 154
N EP I+ FLT YL+ +K+ FD K + + GKD+ I V + P
Sbjct: 534 NGEPLIAAIQDFLTGAYLLT--LKDTFFDRAKACQIIASILVGKDEKIKVRLPPP 586
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 312 NCEP--GVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDKLITVEINRP 154
N EP I+ FLT YL+ +K+ FD K + + GKD+ I V + P
Sbjct: 534 NGEPLIAAIQDFLTGAYLLT--LKDTFFDRAKACQIIASILVGKDEKIKVRLPPP 586
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,307,678
Number of Sequences: 237096
Number of extensions: 2515625
Number of successful extensions: 4154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4153
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -