Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o19
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 153  FAFSVINNVLDTTPKALLIAGVYY 82
            F FS   ++LDT  + LLI  V+Y
Sbjct: 1416 FGFST-EDILDTADEDLLINNVFY 1438


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 646 RCLYLFLSV 672
           RC+YLFLSV
Sbjct: 6   RCIYLFLSV 14


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 369 QDLDILFDKKRAQLCGVTNN 310
           ++++I  DKK   + G TNN
Sbjct: 195 EEVNIFLDKKGFHMDGYTNN 214


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 526 DLIGKNCE*CEVTSLERYADELCIVFRNLGI 618
           +L+GK      V ++E  ++ + + F NLGI
Sbjct: 115 NLVGKEACKQGVCTVEVSSENMTVTFANLGI 145


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 526 DLIGKNCE*CEVTSLERYADELCIVFRNLGI 618
           +L+GK      V ++E  ++ + + F NLGI
Sbjct: 115 NLVGKEACKQGVCTVEVSSENMTVTFANLGI 145


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 476 TSVFKLLNFCVSLYNPL 526
           +S+F  L +C SL NP+
Sbjct: 409 SSLFLWLGYCNSLLNPI 425


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 351 FDKKRAQLCGVTNNCEPGVIKSFLTETYLVDKIIKENSFDEVKKPNKVEEVCPGKDK 181
           F+    QL GV  N +   + S      L+  +IK  + ++ + PN  +E  P K++
Sbjct: 742 FEMYHQQLQGVAKNKKN--VGSMSRNKALLP-VIKPANVNKEQSPNSTKETTPKKER 795


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,916
Number of Sequences: 438
Number of extensions: 5414
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)