Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15o15
(818 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens ... 56 2e-07
BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open read... 55 4e-07
BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein. 55 4e-07
BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sp... 49 2e-05
BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sp... 49 2e-05
AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein. 49 2e-05
AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein. 49 2e-05
BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein. 46 8e-05
BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein. 44 7e-04
U14383-1|AAA58346.1| 313|Homo sapiens mucin protein. 33 1.2
AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein. 33 1.2
U79283-1|AAB50219.1| 325|Homo sapiens albumin D-box binding pro... 32 2.9
U48213-1|AAB18668.1| 325|Homo sapiens D-site binding protein pr... 32 2.9
EF015902-1|ABM64213.1| 325|Homo sapiens albumin D-box protein. 32 2.9
BT006836-1|AAP35482.1| 325|Homo sapiens D site of albumin promo... 32 2.9
BC011965-1|AAH11965.1| 325|Homo sapiens D site of albumin promo... 32 2.9
AF284337-1|AAG14458.1| 221|Homo sapiens SEBOX protein. 31 5.0
U06936-1|AAA81374.1| 325|Homo sapiens albumin D-box binding pro... 31 6.6
BC113396-1|AAI13397.1| 189|Homo sapiens basic helix-loop-helix ... 31 6.6
BC113394-1|AAI13395.1| 189|Homo sapiens basic helix-loop-helix ... 31 6.6
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 6.6
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 6.6
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 6.6
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 6.6
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 6.6
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 6.6
BC030281-1|AAH30281.1| 264|Homo sapiens FLJ21438 protein protein. 30 8.8
AK025091-1|BAB15064.1| 196|Homo sapiens protein ( Homo sapiens ... 30 8.8
AK024488-1|BAB15778.1| 674|Homo sapiens FLJ00087 protein protein. 30 8.8
>AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ40059 fis, clone TCOLN2000139. ).
Length = 289
Score = 55.6 bits (128), Expect = 2e-07
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Frame = -3
Query: 723 YRID-RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXX 547
Y +D +VTR G PA+S R SR PGPG+++PE+ PP++ PA+++
Sbjct: 90 YFLDPKVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPVRHRTPPAFTLGCRL 149
Query: 546 XXXXXXXXXXXXXXALK---LGS------GSPAYTMGARV----GFQAKAKSPGPAVYFQ 406
GS SP+YT+ R Q A+ PGP Y
Sbjct: 150 PLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDS 209
Query: 405 RDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHADWAP 229
DAN YR + P ++ A+ P + K A+S G +H+ A
Sbjct: 210 PDANTYRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHSKRAS 269
Query: 228 PM 223
M
Sbjct: 270 TM 271
>BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open reading
frame 19 protein.
Length = 289
Score = 54.8 bits (126), Expect = 4e-07
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 15/182 (8%)
Frame = -3
Query: 723 YRID-RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXX 547
Y +D +VTR G PA+S R SR PGPG+++PE+ PP + PA+++
Sbjct: 90 YFLDPKVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPARHRTPPAFTLGCRL 149
Query: 546 XXXXXXXXXXXXXXALK---LGS------GSPAYTMGARV----GFQAKAKSPGPAVYFQ 406
GS SP+YT+ R Q A+ PGP Y
Sbjct: 150 PLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDS 209
Query: 405 RDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHADWAP 229
DAN YR + P ++ A+ P + K A+S G +H+ A
Sbjct: 210 PDANTYRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHSKRAS 269
Query: 228 PM 223
M
Sbjct: 270 TM 271
>BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein.
Length = 253
Score = 54.8 bits (126), Expect = 4e-07
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 15/182 (8%)
Frame = -3
Query: 723 YRID-RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXX 547
Y +D +VTR G PA+S R SR PGPG+++PE+ PP + PA+++
Sbjct: 54 YFLDPKVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPARHRTPPAFTLGCRL 113
Query: 546 XXXXXXXXXXXXXXALK---LGS------GSPAYTMGARV----GFQAKAKSPGPAVYFQ 406
GS SP+YT+ R Q A+ PGP Y
Sbjct: 114 PLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDS 173
Query: 405 RDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHADWAP 229
DAN YR + P ++ A+ P + K A+S G +H+ A
Sbjct: 174 PDANTYRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHSKRAS 233
Query: 228 PM 223
M
Sbjct: 234 TM 235
>BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -3
Query: 711 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 532
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 531 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 388
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 387 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 217
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -3
Query: 711 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 532
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 531 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 388
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 387 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 217
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -3
Query: 711 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 532
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 531 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 388
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 387 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 217
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -3
Query: 711 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 532
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 531 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 388
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 387 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 217
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein.
Length = 109
Score = 45.6 bits (103), Expect(2) = 8e-05
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = -3
Query: 684 APAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 559
APA++FGARFP++ T PGPG P R APAYS+
Sbjct: 28 APAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSI 69
Score = 21.0 bits (42), Expect(2) = 8e-05
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 486 GSPAYTMGARVGFQAKAKSPGP 421
G+PAY++ R A +PGP
Sbjct: 63 GAPAYSIYGRPRRSAPFLTPGP 84
>BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein.
Length = 241
Score = 44.0 bits (99), Expect = 7e-04
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 13/181 (7%)
Frame = -3
Query: 711 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 532
R+T G APA+S R A PGPG + PER P AP +++
Sbjct: 63 RMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRNWGVQA 122
Query: 531 XXXXXXXXXALK---LGS------GSPAYTM-GARVG---FQAKAKSPGPAVYFQRDANV 391
LG +P ++ G R F+ +K+PGP Y V
Sbjct: 123 EQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPGV 182
Query: 390 YRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYNTKKNPYAYSFGTKHADWAPPMIIRE 211
Y+++ P ++ AY N+ +K P +SFG +H+D+ P++
Sbjct: 183 YKSRAPQFTILARTSLPQDNTRKPGPAAY--NVDQHRK-PRGWSFGIRHSDYLAPLVTDA 239
Query: 210 D 208
D
Sbjct: 240 D 240
Score = 31.9 bits (69), Expect = 2.9
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Frame = -3
Query: 654 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXXXXXXXXXXXALKLGS---- 487
P+ T PGPG P R APAYS+ +
Sbjct: 46 PTPQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATY 105
Query: 486 -GSPAYTMGAR-VGFQAKAKSPGPAVY 412
+P +T+ R G QA+ +SPGPA Y
Sbjct: 106 PSAPRHTIAPRNWGVQAEQQSPGPAAY 132
>U14383-1|AAA58346.1| 313|Homo sapiens mucin protein.
Length = 313
Score = 33.1 bits (72), Expect = 1.2
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQG-RARTLPSAAPR*RTPALLXTP 561
G SCPRP PG R A +L+ +G R LP+++P R P P
Sbjct: 40 GFMSCPRPFQEGTPGSRAAHVLSRKGPRVHELPTSSPG-RDPGFTSCP 86
Score = 32.7 bits (71), Expect = 1.6
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -1
Query: 692 SCPRPPGASAPGFRRARLLAPQG-RARTLPSAAPR*RTPALLXTPWALXSASH-RDGPGP 519
+CPRP PG R A +L+ +G R LP+ +P R P + P L + + P P
Sbjct: 97 NCPRPLQEGTPGSRAAHVLSRRGHRVHELPTPSPG-RDPGFMSCPRPLQEGTRVTNCPRP 155
Query: 518 RLTPTR 501
TR
Sbjct: 156 LQEGTR 161
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQG-RARTLPSAAP 594
G SCPRP PG R A L+ +G R LP+++P
Sbjct: 228 GFTSCPRPLQEGTPGSRAAHALSRRGHRVHELPTSSP 264
Score = 31.5 bits (68), Expect = 3.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 692 SCPRPPGASAPGFRRARLLAPQG-RARTLPSAAP 594
SCPRP PG R A L+ +G R LP+++P
Sbjct: 2 SCPRPLQEGTPGSRAAHALSRRGHRVHELPTSSP 35
>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
Length = 1134
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/83 (37%), Positives = 35/83 (42%)
Frame = -1
Query: 692 SCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGPGPRL 513
S PRPP A RR PQ R R PS PR LL +P +L S R PGPR
Sbjct: 1034 SPPRPPSRPA---RRGPRPTPQARRRPRPS--PR----RLLRSPHSLCSPRLR--PGPRA 1082
Query: 512 TPTRSN*XLARRLIPWALGSGSK 444
P R + W GS +
Sbjct: 1083 DPRRERASTSPPPRSWPSGSACR 1105
>U79283-1|AAB50219.1| 325|Homo sapiens albumin D-box binding
protein protein.
Length = 325
Score = 31.9 bits (69), Expect = 2.9
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSAS-HRDGP 525
G P PPG +P AR AP + SA+PR +P AL +AS HR G
Sbjct: 127 GLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPR-SSPGHAPARAALGTASGHRAGL 185
Query: 524 GPRLTPT 504
R TP+
Sbjct: 186 TSRDTPS 192
>U48213-1|AAB18668.1| 325|Homo sapiens D-site binding protein
protein.
Length = 325
Score = 31.9 bits (69), Expect = 2.9
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSAS-HRDGP 525
G P PPG +P AR AP + SA+PR +P AL +AS HR G
Sbjct: 127 GLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPR-SSPGHAPARAALGTASGHRAGL 185
Query: 524 GPRLTPT 504
R TP+
Sbjct: 186 TSRDTPS 192
>EF015902-1|ABM64213.1| 325|Homo sapiens albumin D-box protein.
Length = 325
Score = 31.9 bits (69), Expect = 2.9
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSAS-HRDGP 525
G P PPG +P AR AP + SA+PR +P AL +AS HR G
Sbjct: 127 GLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPR-SSPGHAPARAALGTASGHRAGL 185
Query: 524 GPRLTPT 504
R TP+
Sbjct: 186 TSRDTPS 192
>BT006836-1|AAP35482.1| 325|Homo sapiens D site of albumin promoter
(albumin D-box) binding protein protein.
Length = 325
Score = 31.9 bits (69), Expect = 2.9
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSAS-HRDGP 525
G P PPG +P AR AP + SA+PR +P AL +AS HR G
Sbjct: 127 GLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPR-SSPGHAPARAALGTASGHRAGL 185
Query: 524 GPRLTPT 504
R TP+
Sbjct: 186 TSRDTPS 192
>BC011965-1|AAH11965.1| 325|Homo sapiens D site of albumin promoter
(albumin D-box) binding protein protein.
Length = 325
Score = 31.9 bits (69), Expect = 2.9
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSAS-HRDGP 525
G P PPG +P AR AP + SA+PR +P AL +AS HR G
Sbjct: 127 GLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPR-SSPGHAPARAALGTASGHRAGL 185
Query: 524 GPRLTPT 504
R TP+
Sbjct: 186 TSRDTPS 192
>AF284337-1|AAG14458.1| 221|Homo sapiens SEBOX protein.
Length = 221
Score = 31.1 bits (67), Expect = 5.0
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 581 PALLXTPWALXSASHRDGPGPRLTPTRSN*XLARRLIPWALGSGSKLKPSL-RDLRSTSR 405
P TP H P P L+P R A+ + PW S++ PSL R TS
Sbjct: 144 PPSSGTPQRTSVCRHSSCPAPGLSP-RQGWEGAKAVAPWGSAGASEVHPSLERATPQTSL 202
Query: 404 GTLT 393
G+L+
Sbjct: 203 GSLS 206
>U06936-1|AAA81374.1| 325|Homo sapiens albumin D-box binding
protein protein.
Length = 325
Score = 30.7 bits (66), Expect = 6.6
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 701 GTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSAS-HRDGP 525
G P PPG +P AR AP + SA+PR +P AL +A+ HR G
Sbjct: 127 GLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPR-SSPGHAPARAALGTATGHRAGL 185
Query: 524 GPRLTPT 504
R TP+
Sbjct: 186 TSRDTPS 192
>BC113396-1|AAI13397.1| 189|Homo sapiens basic helix-loop-helix
domain containing, class B, 8 protein.
Length = 189
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = +1
Query: 613 VRARPWGASSRA-----RRKPGAEAPGGRGHESVPR 705
+R+RP A++RA RR+PG PGGR S+ R
Sbjct: 41 LRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQR 76
>BC113394-1|AAI13395.1| 189|Homo sapiens basic helix-loop-helix
domain containing, class B, 8 protein.
Length = 189
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = +1
Query: 613 VRARPWGASSRA-----RRKPGAEAPGGRGHESVPR 705
+R+RP A++RA RR+PG PGGR S+ R
Sbjct: 41 LRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQR 76
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.7 bits (66), Expect = 6.6
Identities = 30/95 (31%), Positives = 40/95 (42%)
Frame = -1
Query: 650 RARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGPGPRLTPTRSN*XLARRLI 471
R+R A +GR+R+ A R RT + + S + R G TP R +R
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG--RSRSRT 662
Query: 470 PWALGSGSKLKPSLRDLRSTSRGTLTYTGRNRQCT 366
P G P+ R RS SR T GR+R T
Sbjct: 663 PARRGRSRSRTPARRSGRSRSR-TPARRGRSRSRT 696
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.7 bits (66), Expect = 6.6
Identities = 30/95 (31%), Positives = 40/95 (42%)
Frame = -1
Query: 650 RARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGPGPRLTPTRSN*XLARRLI 471
R+R A +GR+R+ A R RT + + S + R G TP R +R
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG--RSRSRT 662
Query: 470 PWALGSGSKLKPSLRDLRSTSRGTLTYTGRNRQCT 366
P G P+ R RS SR T GR+R T
Sbjct: 663 PARRGRSRSRTPARRSGRSRSR-TPARRGRSRSRT 696
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.7 bits (66), Expect = 6.6
Identities = 30/95 (31%), Positives = 40/95 (42%)
Frame = -1
Query: 650 RARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGPGPRLTPTRSN*XLARRLI 471
R+R A +GR+R+ A R RT + + S + R G TP R +R
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG--RSRSRT 662
Query: 470 PWALGSGSKLKPSLRDLRSTSRGTLTYTGRNRQCT 366
P G P+ R RS SR T GR+R T
Sbjct: 663 PARRGRSRSRTPARRSGRSRSR-TPARRGRSRSRT 696
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.7 bits (66), Expect = 6.6
Identities = 30/95 (31%), Positives = 40/95 (42%)
Frame = -1
Query: 650 RARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGPGPRLTPTRSN*XLARRLI 471
R+R A +GR+R+ A R RT + + S + R G TP R +R
Sbjct: 570 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG--RSRSRT 627
Query: 470 PWALGSGSKLKPSLRDLRSTSRGTLTYTGRNRQCT 366
P G P+ R RS SR T GR+R T
Sbjct: 628 PARRGRSRSRTPARRSGRSRSR-TPARRGRSRSRT 661
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.7 bits (66), Expect = 6.6
Identities = 30/95 (31%), Positives = 40/95 (42%)
Frame = -1
Query: 650 RARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGPGPRLTPTRSN*XLARRLI 471
R+R A +GR+R+ A R RT + + S + R G TP R +R
Sbjct: 395 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG--RSRSRT 452
Query: 470 PWALGSGSKLKPSLRDLRSTSRGTLTYTGRNRQCT 366
P G P+ R RS SR T GR+R T
Sbjct: 453 PARRGRSRSRTPARRSGRSRSR-TPARRGRSRSRT 486
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.7 bits (66), Expect = 6.6
Identities = 30/95 (31%), Positives = 40/95 (42%)
Frame = -1
Query: 650 RARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGPGPRLTPTRSN*XLARRLI 471
R+R A +GR+R+ A R RT + + S + R G TP R +R
Sbjct: 653 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG--RSRSRT 710
Query: 470 PWALGSGSKLKPSLRDLRSTSRGTLTYTGRNRQCT 366
P G P+ R RS SR T GR+R T
Sbjct: 711 PARRGRSRSRTPARRSGRSRSR-TPARRGRSRSRT 744
>BC030281-1|AAH30281.1| 264|Homo sapiens FLJ21438 protein protein.
Length = 264
Score = 30.3 bits (65), Expect = 8.8
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -1
Query: 704 RGTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGP 525
R ++S RP RR R P R +++P P R + PW S GP
Sbjct: 45 RRSESWARPRPDEERPLRRPR---PVQRTQSVPVRRPARRRQSA--GPWPRPKGSLSMGP 99
Query: 524 GPRLTP-TRSN*XLARR-LIPW 465
PR P TR + L R+ +PW
Sbjct: 100 APRARPWTRDSASLPRKPSVPW 121
>AK025091-1|BAB15064.1| 196|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21438 fis, clone COL04316. ).
Length = 196
Score = 30.3 bits (65), Expect = 8.8
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -1
Query: 704 RGTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGP 525
R ++S RP RR R P R +++P P R + PW S GP
Sbjct: 45 RRSESWARPRPDEERPLRRPR---PVQRTQSVPVRRPARRRQSA--GPWPRPKGSLSMGP 99
Query: 524 GPRLTP-TRSN*XLARR-LIPW 465
PR P TR + L R+ +PW
Sbjct: 100 APRARPWTRDSASLPRKPSVPW 121
>AK024488-1|BAB15778.1| 674|Homo sapiens FLJ00087 protein protein.
Length = 674
Score = 30.3 bits (65), Expect = 8.8
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -1
Query: 704 RGTDSCPRPPGASAPGFRRARLLAPQGRARTLPSAAPR*RTPALLXTPWALXSASHRDGP 525
R ++S RP RR R P R +++P P R + PW S GP
Sbjct: 523 RRSESWARPRPDEERPLRRPR---PVQRTQSVPVRRPARRRQSA--GPWPRPKGSLSMGP 577
Query: 524 GPRLTP-TRSN*XLARR-LIPW 465
PR P TR + L R+ +PW
Sbjct: 578 APRARPWTRDSASLPRKPSVPW 599
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,574,973
Number of Sequences: 237096
Number of extensions: 2299146
Number of successful extensions: 9863
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 8384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9813
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -