Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15o12
(236 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 3.1
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 23 4.1
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 23 4.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 23 5.4
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 5.4
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 23 5.4
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 23 7.1
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 23 7.1
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 22 9.4
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 22 9.4
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 22 9.4
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 22 9.4
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 23.8 bits (49), Expect = 3.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3
Query: 21 IYYYYYVQHL 50
+YYYY+V HL
Sbjct: 27 LYYYYFVSHL 36
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 24 YYYYYVQHLWKGT 62
YY+YY ++KGT
Sbjct: 283 YYFYYATQVFKGT 295
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 24 YYYYYVQHLWKGT 62
YY+YY ++KGT
Sbjct: 283 YYFYYATQVFKGT 295
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = -2
Query: 130 CRIFFNEPFGRTREAIIRPAAFFVPFHRC 44
C++FF E F R A F RC
Sbjct: 1660 CKVFFAEQFSALRRACGCEETFVTSLARC 1688
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 12 LVIIYYYYYV 41
L IIYYYYY+
Sbjct: 64 LFIIYYYYYL 73
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 68 SCWTYYSFTGSSKRFIKKNSANSHHFLLRQYFVP 169
+CWT+ F + + + H+FLLR +VP
Sbjct: 361 NCWTWDQFARTWNKPV-------HYFLLRHVYVP 387
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 22.6 bits (46), Expect = 7.1
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +3
Query: 27 YYYYVQHLWKGTKKAAGRIIASRVLPKGSLKKILQIATIFY*DNISSHLILFNLMFY 197
+Y +QH ++ R + + K K L+ IFY IS + F L Y
Sbjct: 71 HYKIIQHFRSRFREIHPRHVVEKKKTKKVFFKFLKTCAIFYQTCISELISKFQLDSY 127
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 7 VAWLLFIIIIMFSIYGRAQ 63
+ W +F I+F+I+G Q
Sbjct: 6 ICWFIFQAAIIFAIFGSCQ 24
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +2
Query: 62 KESCWTYYSFTGSSK 106
+ CW Y FT SK
Sbjct: 565 RRKCWRVYHFTARSK 579
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 121 FFNEPFGRTREAIIRPAAFFVPFH 50
F N R R I+ +FF+PFH
Sbjct: 622 FDNFSESRPRLNILNNCSFFLPFH 645
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 24 YYYYYVQHLWKGT 62
YY+YY ++KGT
Sbjct: 283 YYFYYGTQVFKGT 295
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 184 LNKMRWDEILSQ*KMVAICRIFFNEPF 104
+N + W ++Q + AI RI+ N F
Sbjct: 155 MNTLMWTNPITQEHLSAISRIYKNSEF 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 946,982
Number of Sequences: 5004
Number of extensions: 15463
Number of successful extensions: 45
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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