Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15o12
(236 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M74547-1|AAA36397.1| 935|Homo sapiens p107 protein. 29 2.6
L14812-1|AAA02489.1| 1068|Homo sapiens p107 protein. 29 2.6
BC032247-1|AAH32247.1| 1014|Homo sapiens retinoblastoma-like 1 (... 29 2.6
AL391114-2|CAI95152.1| 1014|Homo sapiens retinoblastoma-like 1 (... 29 2.6
AL391114-1|CAI95151.1| 1068|Homo sapiens retinoblastoma-like 1 (... 29 2.6
AL365505-2|CAI95178.1| 1014|Homo sapiens retinoblastoma-like 1 (... 29 2.6
AL365505-1|CAI95177.1| 1068|Homo sapiens retinoblastoma-like 1 (... 29 2.6
AL136172-4|CAI95717.1| 1014|Homo sapiens retinoblastoma-like 1 (... 29 2.6
AL136172-3|CAI95716.1| 1068|Homo sapiens retinoblastoma-like 1 (... 29 2.6
CR457026-1|CAG33307.1| 492|Homo sapiens FRS3 protein. 28 4.6
BC010611-1|AAH10611.1| 492|Homo sapiens fibroblast growth facto... 28 4.6
AL365205-4|CAI13183.1| 492|Homo sapiens fibroblast growth facto... 28 4.6
AF036718-1|AAB92555.1| 492|Homo sapiens FGFR signalling adaptor... 28 4.6
DQ926186-1|ABI64107.1| 133|Homo sapiens immunoglobulin heavy ch... 27 8.0
AY557626-1|AAS66903.1| 127|Homo sapiens immunoglobulin heavy ch... 27 8.0
AY557625-1|AAS66902.1| 127|Homo sapiens immunoglobulin heavy ch... 27 8.0
AF460600-1|AAM87971.1| 74|Homo sapiens immunoglobulin heavy ch... 23 9.5
>M74547-1|AAA36397.1| 935|Homo sapiens p107 protein.
Length = 935
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 44 CWTLFVYTKGNFRMIGDDLVNSYHLLL 70
>L14812-1|AAA02489.1| 1068|Homo sapiens p107 protein.
Length = 1068
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>BC032247-1|AAH32247.1| 1014|Homo sapiens retinoblastoma-like 1
(p107) protein.
Length = 1014
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>AL391114-2|CAI95152.1| 1014|Homo sapiens retinoblastoma-like 1
(p107) protein.
Length = 1014
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>AL391114-1|CAI95151.1| 1068|Homo sapiens retinoblastoma-like 1
(p107) protein.
Length = 1068
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>AL365505-2|CAI95178.1| 1014|Homo sapiens retinoblastoma-like 1
(p107) protein.
Length = 1014
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>AL365505-1|CAI95177.1| 1068|Homo sapiens retinoblastoma-like 1
(p107) protein.
Length = 1068
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>AL136172-4|CAI95717.1| 1014|Homo sapiens retinoblastoma-like 1
(p107) protein.
Length = 1014
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>AL136172-3|CAI95716.1| 1068|Homo sapiens retinoblastoma-like 1
(p107) protein.
Length = 1068
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 CWTYYSFTGSSKRFIKKNSANSHHFLL 151
CWT + +T + R I + NS+H LL
Sbjct: 177 CWTLFVYTKGNFRMIGDDLVNSYHLLL 203
>CR457026-1|CAG33307.1| 492|Homo sapiens FRS3 protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 96 PVKL*YVQQLSLCPSI-DAEHNNNNK**PSHC 4
P + V+ LCPS+ D H+NNN PS C
Sbjct: 248 PARRHMVKCQGLCPSLHDPPHHNNNNEAPSEC 279
>BC010611-1|AAH10611.1| 492|Homo sapiens fibroblast growth factor
receptor substrate 3 protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 96 PVKL*YVQQLSLCPSI-DAEHNNNNK**PSHC 4
P + V+ LCPS+ D H+NNN PS C
Sbjct: 248 PARRHMVKCQGLCPSLHDPPHHNNNNEAPSEC 279
>AL365205-4|CAI13183.1| 492|Homo sapiens fibroblast growth factor
receptor substrate 3 protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 96 PVKL*YVQQLSLCPSI-DAEHNNNNK**PSHC 4
P + V+ LCPS+ D H+NNN PS C
Sbjct: 248 PARRHMVKCQGLCPSLHDPPHHNNNNEAPSEC 279
>AF036718-1|AAB92555.1| 492|Homo sapiens FGFR signalling adaptor
SNT-2 protein.
Length = 492
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 96 PVKL*YVQQLSLCPSI-DAEHNNNNK**PSHC 4
P + V+ LCPS+ D H+NNN PS C
Sbjct: 248 PARRHMVKCQGLCPSLHDPPHHNNNNEAPSEC 279
>DQ926186-1|ABI64107.1| 133|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 133
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +3
Query: 9 GLVIIYYYYYVQHLW-KGT 62
G+ I YYYYYV +W +GT
Sbjct: 106 GVFIQYYYYYVMDVWGQGT 124
>AY557626-1|AAS66903.1| 127|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 127
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 9 GLVIIYYYYYVQHLW-KGT 62
G++ YYYYY +W KGT
Sbjct: 103 GVITYYYYYYYMDVWGKGT 121
>AY557625-1|AAS66902.1| 127|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 127
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 9 GLVIIYYYYYVQHLW-KGT 62
G++ YYYYY +W KGT
Sbjct: 103 GVITYYYYYYYMDVWGKGT 121
>AF460600-1|AAM87971.1| 74|Homo sapiens immunoglobulin heavy
chain variable region protein.
Length = 74
Score = 23.4 bits (48), Expect(2) = 9.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3
Query: 9 GLVIIYYYYY 38
G++I YYYYY
Sbjct: 57 GVIITYYYYY 66
Score = 22.6 bits (46), Expect(2) = 9.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 12 LVIIYYYYYVQHLW 53
++ YYYYY +W
Sbjct: 59 IITYYYYYYGMDVW 72
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,830,673
Number of Sequences: 237096
Number of extensions: 503237
Number of successful extensions: 1439
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 76,859,062
effective HSP length: 57
effective length of database: 63,344,590
effective search space used: 1330236390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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