Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o12
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   0.51 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   8.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 0.51
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   TVAWLLFIIIIMFSIYGRAQRKLLDVL*LHGFFQKV 111
           T  WL    +   + YG+ Q KLL++  +HG  +KV
Sbjct: 225 TKIWLRPDWLFNLTKYGKNQIKLLEI--IHGLTKKV 258


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 81  YVQQLSLCPSIDAEHNNNNK 22
           + + + LC  I   +++NNK
Sbjct: 649 FQENVQLCSEISESYSSNNK 668


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 27  YYYYVQHLWKGTKKA 71
           +YY +  L+K  KKA
Sbjct: 283 FYYQLTDLYKKIKKA 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,772
Number of Sequences: 438
Number of extensions: 998
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)