Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15o07
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 31 0.19
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 29 0.99
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 26 5.3
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 26 7.0
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 26 7.0
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 7.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 7.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.3
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.1 bits (67), Expect = 0.19
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -3
Query: 390 TKENEGEKMEKAPRDYKRVTLEELAQKIQTRLQTGQ-NVNVPDQII----VNTINDNAVL 226
T ENE + +APR + V ELAQ+ ++T N++V ++ +N ND +
Sbjct: 64 TSENESLPLNRAPRSLREVA-SELAQEETLPVETSDLNIDVESEVFDLEDINFQNDADDI 122
Query: 225 ESKSXNXNKSIEIFDNDNKNNLVQYQPKT 139
+ N + ++ N + QP T
Sbjct: 123 NQRFTYNNHPASVENSLTNVNSIHAQPTT 151
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 28.7 bits (61), Expect = 0.99
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 624 SVMRNWKELKEGXLSISED-VRAHFLKFSERTIPPLNRNSVKKXDVTPEEKIGEFENIIR 448
++M++ L +SI ++AH L S+ T P NR + DVTP + + E N
Sbjct: 942 TIMKDPVVLPRSGISIDRSTIKAHLL--SDAT-DPFNRTPLTLDDVTPNDTLREEINTFL 998
Query: 447 RCAANENS 424
+ N++S
Sbjct: 999 KSKRNKHS 1006
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 137 DSKDVMDYPERIRIPKKAYXKNATYKVNDCYY 42
+ +D+++Y E ++ A NA + ++CYY
Sbjct: 85 EGQDIVEYNEELKQLDNASWGNAPWLYSECYY 116
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 609 WKELKEGXLS--ISEDVRAHFLKFSERTIPPLNRNSVKKXDVTPEEKIGEFENII 451
WKE E I+ DV F+ RT+P L + + DV EE + NII
Sbjct: 509 WKESLEAKAVAYINVDVAVSGDTFTARTVPGLKKVIQRAFDVANEEDEMKAANII 563
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -3
Query: 357 APRDYKRVTLEELAQKIQTRLQTGQNVNVPDQIIVNTINDNAVLESKS 214
AP DY+ + L + + I +RL +N+N P + ++N ++ ++
Sbjct: 251 APGDYEDLPLSNMRKIIASRLAESKNMN-PHYYVTVSVNMEKIIRLRA 297
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -3
Query: 582 SISEDVRAHFLKFSERTIPPLNRNSVKKXDVTPEEKIGEFENIIRRCAANENSDQ 418
++++DV HF++ ER + N +S ++ +T E KI + ++ NE +
Sbjct: 125 ALNQDVGQHFIEEEERNVSLSNNSSGQRQPLT-ESKISNSQLEYQQRLINERQGE 178
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/86 (22%), Positives = 37/86 (43%)
Frame = -3
Query: 495 DVTPEEKIGEFENIIRRCAANENSDQXTFXQDYXATKENEGEKMEKAPRDYKRVTLEELA 316
D EE E + I R E + D +E + ++ E D +R+ E
Sbjct: 154 DEDEEELEDEEDEIGREDGFIEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAEEYRE 213
Query: 315 QKIQTRLQTGQNVNVPDQIIVNTIND 238
+ +++ G NVP ++++ ++ND
Sbjct: 214 KYGRSQTVVGDTSNVPQRLLLPSVND 239
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.4 bits (53), Expect = 9.3
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = -3
Query: 570 DVRAHFLKFSERTIPPLNRNSVKKXDVTPEEKIGEFE-NIIRRCAAN-ENSDQXTFXQDY 397
+ R L++ T L RN +K ++ + +I E E N ++R EN Q
Sbjct: 811 EARKTALEYELNTNLYLRRNPLKA-EIGSDNRIDESELNSVKRSLLKYENKLQIIKSSSS 869
Query: 396 XATKENEGEKMEKAPRDYKRVTLEELAQKIQTRLQTGQNVN 274
++ + E + + + +LEEL ++ TR++ +N
Sbjct: 870 GLEEQMQRINSEISDKRNELESLEELQHEVATRIEQDAKIN 910
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,001
Number of Sequences: 5004
Number of extensions: 46971
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -