Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15o07
(782 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of... 33 0.88
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein. 33 0.88
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein. 33 0.88
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten... 33 0.88
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ... 33 0.88
BC126208-1|AAI26209.1| 1161|Homo sapiens SMC1B protein protein. 31 3.5
AL021391-1|CAI18928.1| 1235|Homo sapiens structural maintenance ... 31 3.5
AL008718-2|CAI17945.1| 1235|Homo sapiens structural maintenance ... 31 3.5
AJ504806-1|CAD43404.2| 1235|Homo sapiens SMC1beta protein protein. 31 3.5
>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 33.5 bits (73), Expect = 0.88
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Frame = -3
Query: 642 IARHDQSVMRNWKELKEGXLSISEDVRAHFLK-FSERTIPPLNRNSVKKXDVTPEEKIGE 466
I R QS R K+LKE + ++V F + R I VK+ + ++++ E
Sbjct: 751 IKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRL-E 809
Query: 465 FENIIRRCAAN---------ENSDQXTFXQDYXATKENEGEKMEKAPRDYKRVTLEELAQ 313
FEN R E+ D+ + ENE EK++K + + ++ E +AQ
Sbjct: 810 FENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDETMAQ 869
>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
Length = 1233
Score = 33.5 bits (73), Expect = 0.88
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Frame = -3
Query: 642 IARHDQSVMRNWKELKEGXLSISEDVRAHFLK-FSERTIPPLNRNSVKKXDVTPEEKIGE 466
I R QS R K+LKE + ++V F + R I VK+ + ++++ E
Sbjct: 751 IKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRL-E 809
Query: 465 FENIIRRCAAN---------ENSDQXTFXQDYXATKENEGEKMEKAPRDYKRVTLEELAQ 313
FEN R E+ D+ + ENE EK++K + + ++ E +AQ
Sbjct: 810 FENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDETMAQ 869
>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
Length = 1233
Score = 33.5 bits (73), Expect = 0.88
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Frame = -3
Query: 642 IARHDQSVMRNWKELKEGXLSISEDVRAHFLK-FSERTIPPLNRNSVKKXDVTPEEKIGE 466
I R QS R K+LKE + ++V F + R I VK+ + ++++ E
Sbjct: 751 IKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRL-E 809
Query: 465 FENIIRRCAAN---------ENSDQXTFXQDYXATKENEGEKMEKAPRDYKRVTLEELAQ 313
FEN R E+ D+ + ENE EK++K + + ++ E +AQ
Sbjct: 810 FENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDETMAQ 869
>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural maintenance
of chromosomes 1-like 1 protein.
Length = 1233
Score = 33.5 bits (73), Expect = 0.88
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Frame = -3
Query: 642 IARHDQSVMRNWKELKEGXLSISEDVRAHFLK-FSERTIPPLNRNSVKKXDVTPEEKIGE 466
I R QS R K+LKE + ++V F + R I VK+ + ++++ E
Sbjct: 751 IKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRL-E 809
Query: 465 FENIIRRCAAN---------ENSDQXTFXQDYXATKENEGEKMEKAPRDYKRVTLEELAQ 313
FEN R E+ D+ + ENE EK++K + + ++ E +AQ
Sbjct: 810 FENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDETMAQ 869
>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 33.5 bits (73), Expect = 0.88
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Frame = -3
Query: 642 IARHDQSVMRNWKELKEGXLSISEDVRAHFLK-FSERTIPPLNRNSVKKXDVTPEEKIGE 466
I R QS R K+LKE + ++V F + R I VK+ + ++++ E
Sbjct: 751 IKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRL-E 809
Query: 465 FENIIRRCAAN---------ENSDQXTFXQDYXATKENEGEKMEKAPRDYKRVTLEELAQ 313
FEN R E+ D+ + ENE EK++K + + ++ E +AQ
Sbjct: 810 FENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDETMAQ 869
>BC126208-1|AAI26209.1| 1161|Homo sapiens SMC1B protein protein.
Length = 1161
Score = 31.5 bits (68), Expect = 3.5
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 525 PLNRNSVKKXDVTPEEKIGEFENIIRRCAANENSDQXTFXQDYXATKENEGEKMEKAPRD 346
P R + T E IGE+E R+ E Q F + E K+EK +
Sbjct: 148 PKERTQFFEEISTSGELIGEYEEKKRKLQKAEEDAQFNFNKKKNIAAERRQAKLEKEEAE 207
Query: 345 YKRVTLEEL-AQKIQTRL 295
+ LEEL KIQ +L
Sbjct: 208 RYQSLLEELKMNKIQLQL 225
>AL021391-1|CAI18928.1| 1235|Homo sapiens structural maintenance of
chromosomes 1B protein.
Length = 1235
Score = 31.5 bits (68), Expect = 3.5
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 525 PLNRNSVKKXDVTPEEKIGEFENIIRRCAANENSDQXTFXQDYXATKENEGEKMEKAPRD 346
P R + T E IGE+E R+ E Q F + E K+EK +
Sbjct: 148 PKERTQFFEEISTSGELIGEYEEKKRKLQKAEEDAQFNFNKKKNIAAERRQAKLEKEEAE 207
Query: 345 YKRVTLEEL-AQKIQTRL 295
+ LEEL KIQ +L
Sbjct: 208 RYQSLLEELKMNKIQLQL 225
>AL008718-2|CAI17945.1| 1235|Homo sapiens structural maintenance of
chromosomes 1B protein.
Length = 1235
Score = 31.5 bits (68), Expect = 3.5
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 525 PLNRNSVKKXDVTPEEKIGEFENIIRRCAANENSDQXTFXQDYXATKENEGEKMEKAPRD 346
P R + T E IGE+E R+ E Q F + E K+EK +
Sbjct: 148 PKERTQFFEEISTSGELIGEYEEKKRKLQKAEEDAQFNFNKKKNIAAERRQAKLEKEEAE 207
Query: 345 YKRVTLEEL-AQKIQTRL 295
+ LEEL KIQ +L
Sbjct: 208 RYQSLLEELKMNKIQLQL 225
>AJ504806-1|CAD43404.2| 1235|Homo sapiens SMC1beta protein protein.
Length = 1235
Score = 31.5 bits (68), Expect = 3.5
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 525 PLNRNSVKKXDVTPEEKIGEFENIIRRCAANENSDQXTFXQDYXATKENEGEKMEKAPRD 346
P R + T E IGE+E R+ E Q F + E K+EK +
Sbjct: 148 PKERTQFFEEISTSGELIGEYEEKKRKLQKAEEDAQFNFNKKKNIAAERRQAKLEKEEAE 207
Query: 345 YKRVTLEEL-AQKIQTRL 295
+ LEEL KIQ +L
Sbjct: 208 RYQSLLEELKMNKIQLQL 225
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,169,140
Number of Sequences: 237096
Number of extensions: 1426329
Number of successful extensions: 2794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2794
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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