Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o06
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    25   5.6  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   5.6  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    24   9.7  

>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 297 WCNMAKACNHDRVPICGISHAGDV-VGFRDLCDMFD 193
           +C  +K   +D  P  G     D+ VGF+ LC+ FD
Sbjct: 42  FCQKSKVTEYD--PKTGYPTKADLTVGFKGLCETFD 75


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +2

Query: 248 PQIGTRSWLHAFAMLHHLAPIFRPIAMSSL-SLSCGGPCELTVNIMKQRRYRTMFLDTIV 424
           P+ GTR       ML   A    P+  S + SLS   P  +  N+         F   ++
Sbjct: 108 PRAGTRENALEALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVI 167

Query: 425 PSKPLSNHTSN 457
           PSK +  H SN
Sbjct: 168 PSKMIIPHISN 178


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 359 CELTVNIMKQRRYRTMFLDTIVPSKPLSN 445
           C    N  K+  Y++ FLD  +PSK  S+
Sbjct: 37  CNQASNEEKKILYKSNFLDRFIPSKANSD 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,333
Number of Sequences: 5004
Number of extensions: 33776
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)