Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15o06
(458 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-408|AAF51914.1| 730|Drosophila melanogaster CG1077-PA ... 36 0.035
BT022460-1|AAY54876.1| 514|Drosophila melanogaster IP11746p pro... 30 1.3
AE014134-2795|AAF53578.1| 484|Drosophila melanogaster CG13282-P... 30 1.3
AY061505-1|AAL29053.1| 766|Drosophila melanogaster LD46269p pro... 28 6.9
AY060461-1|AAL25500.1| 80|Drosophila melanogaster SD04019p pro... 28 6.9
AE014297-2907|AAF55833.2| 80|Drosophila melanogaster CG17278-P... 28 6.9
AE014134-3350|AAF53971.1| 766|Drosophila melanogaster CG9246-PA... 28 6.9
AY113376-1|AAM29381.1| 1053|Drosophila melanogaster LP10764p pro... 27 9.2
AF262977-1|AAF76150.1| 5233|Drosophila melanogaster highwire pro... 27 9.2
AE014298-2087|AAF48411.3| 5233|Drosophila melanogaster CG32592-P... 27 9.2
>AE014297-408|AAF51914.1| 730|Drosophila melanogaster CG1077-PA
protein.
Length = 730
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 276 CNHDRVPICGISH-AGDVVGFRDLCDMFDYNCIRRRN---YRQTACPEDKSMLTVSRRP 112
C+ P+CGIS +G+ FR C+M CI R +R CP+ ++ +S +P
Sbjct: 86 CSSRYQPVCGISSKSGERKTFRSRCEMLRTACISRSEWMVHRWGVCPKANAVPQISEKP 144
>BT022460-1|AAY54876.1| 514|Drosophila melanogaster IP11746p
protein.
Length = 514
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 150 PEDKSMLTVSRRPTNSYYDD*LNSCPVFLEHFLLCIPFIN 31
P+D+ M++ RPT S++D N F+E + +P ++
Sbjct: 475 PDDRQMISTEARPTQSWWDYRRNLTYGFMEDNIFSVPTVD 514
>AE014134-2795|AAF53578.1| 484|Drosophila melanogaster CG13282-PA
protein.
Length = 484
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 150 PEDKSMLTVSRRPTNSYYDD*LNSCPVFLEHFLLCIPFIN 31
P+D+ M++ RPT S++D N F+E + +P ++
Sbjct: 445 PDDRQMISTEARPTQSWWDYRRNLTYGFMEDNIFSVPTVD 484
>AY061505-1|AAL29053.1| 766|Drosophila melanogaster LD46269p
protein.
Length = 766
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 100 IAVCWTTGDS*HRFILGTCCLSVISTSNAVIIEHV 204
+ V W+TGD R + C L + A ++ HV
Sbjct: 315 LVVLWSTGDETVRVLAFLCILKITRKQQATMLNHV 349
>AY060461-1|AAL25500.1| 80|Drosophila melanogaster SD04019p
protein.
Length = 80
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 255 ICGISHAGDVVGFRDLCDMFDYNCIRRRNYRQTA---CP 148
IC G +R+LC M NC++ N+++ + CP
Sbjct: 42 ICAADDKGSTKTYRNLCVMKTENCLQNANFQKISDKECP 80
>AE014297-2907|AAF55833.2| 80|Drosophila melanogaster CG17278-PA
protein.
Length = 80
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 255 ICGISHAGDVVGFRDLCDMFDYNCIRRRNYRQTA---CP 148
IC G +R+LC M NC++ N+++ + CP
Sbjct: 42 ICAADDKGSTKTYRNLCVMKTENCLQNANFQKISDKECP 80
>AE014134-3350|AAF53971.1| 766|Drosophila melanogaster CG9246-PA
protein.
Length = 766
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 100 IAVCWTTGDS*HRFILGTCCLSVISTSNAVIIEHV 204
+ V W+TGD R + C L + A ++ HV
Sbjct: 315 LVVLWSTGDETVRVLAFLCILKITRKQQATMLNHV 349
>AY113376-1|AAM29381.1| 1053|Drosophila melanogaster LP10764p
protein.
Length = 1053
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 345 ERDN-EDIAMGRKMGAKWCNMAKAC-NHDRVPICGISHAGDVVGFRDLCDMFDYNCIRRR 172
ERD+ E ++ G+ +K C+ C NHD I CD F + + R
Sbjct: 609 ERDHVEKLSSGQ--WSKLCDTRPLCSNHDDGETAAIIQCETCGSLCGDCDRFLHLNRKTR 666
Query: 171 NYRQTACPEDKSMLTV 124
++++T C E++ + V
Sbjct: 667 SHKRTVCKEEEEAIRV 682
>AF262977-1|AAF76150.1| 5233|Drosophila melanogaster highwire protein.
Length = 5233
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 345 ERDN-EDIAMGRKMGAKWCNMAKAC-NHDRVPICGISHAGDVVGFRDLCDMFDYNCIRRR 172
ERD+ E ++ G+ +K C+ C NHD I CD F + + R
Sbjct: 4789 ERDHVEKLSSGQ--WSKLCDTRPLCSNHDDGETAAIIQCETCGSLCGDCDRFLHLNRKTR 4846
Query: 171 NYRQTACPEDKSMLTV 124
++++T C E++ + V
Sbjct: 4847 SHKRTVCKEEEEAIRV 4862
>AE014298-2087|AAF48411.3| 5233|Drosophila melanogaster CG32592-PA
protein.
Length = 5233
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 345 ERDN-EDIAMGRKMGAKWCNMAKAC-NHDRVPICGISHAGDVVGFRDLCDMFDYNCIRRR 172
ERD+ E ++ G+ +K C+ C NHD I CD F + + R
Sbjct: 4789 ERDHVEKLSSGQ--WSKLCDTRPLCSNHDDGETAAIIQCETCGSLCGDCDRFLHLNRKTR 4846
Query: 171 NYRQTACPEDKSMLTV 124
++++T C E++ + V
Sbjct: 4847 SHKRTVCKEEEEAIRV 4862
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,051,615
Number of Sequences: 53049
Number of extensions: 398178
Number of successful extensions: 1190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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