Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o05
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.0  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 698 KEVKTENSRRELKKNPLLTYTTKHPLSYSNK*INK*HYE 814
           KE   +   RE  K P +  +  +  +YSN   N  +Y+
Sbjct: 286 KERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYK 324


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +2

Query: 161 VSLVSVPIYYYVCPD 205
           +S++++ +YY  CP+
Sbjct: 179 ISILAIKVYYISCPE 193


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 121  FVKLDLNKRMWWLMRSTVH 65
            FV LDL    W+ +R T H
Sbjct: 1519 FVVLDLVPATWYHLRVTAH 1537


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 SLTSQYI*PNFIVLTICMYYASATYYFVYLKTN 305
           +L + Y+   F ++T C++  S   YF+Y   N
Sbjct: 56  NLLNAYV--RFKLVTDCIFVTSEPGYFLYTSKN 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,504
Number of Sequences: 438
Number of extensions: 3787
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)