Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o02
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    30   2.6  
01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945           29   4.6  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    29   6.1  
01_05_0796 - 25297792-25298514                                         28   8.1  

>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 354 YTKYSKWYSEKTHWGRKEKKHLEEQREFQKATDLFIAEKNKQKNRE 217
           + K+ +   EK HW +K ++  E+Q++FQ  +     E+  QK RE
Sbjct: 758 HQKHHQMSQEKHHWQQKHRE--EQQQQFQNQSKEQEQERRMQKLRE 801


>01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945
          Length = 242

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 536 GRCGVKSFCKLSLKFCSCQTHVI 468
           G+C +KS CK ++  CSC  H +
Sbjct: 76  GKCVLKSACKTAMAACSCCCHAM 98


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 769 NSDTPG*AVGQHQDLRTECSTICDIHKTFTVYFLQKGAYRRGFRDQSKNNQK 614
           ++ T G  +G  QD++ +  T+   H+    +  +   +RR F ++ K  QK
Sbjct: 49  DASTFGETIGSAQDVKFDAKTLTQAHRYVLRHLDEIEDFRREFLEEEKRKQK 100


>01_05_0796 - 25297792-25298514
          Length = 240

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 315 WGRKEKKHLE-EQREFQKATDLFIAEKNKQKNREKA 211
           WG +E    E E+ EF++A + FIA++  + +RE++
Sbjct: 182 WGMEEDDGGEKEEEEFRRAVEAFIAKQQTRFHREES 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,875,294
Number of Sequences: 37544
Number of extensions: 384736
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)