Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o02
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 643 FRDQSKNNQKAHREEITKNDTQNT*NNY 560
           F+D++K+    ++     ND Q T NNY
Sbjct: 682 FKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 643 FRDQSKNNQKAHREEITKNDTQNT*NNY 560
           F+D++K+    ++     ND Q T NNY
Sbjct: 682 FKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 643 FRDQSKNNQKAHREEITKNDTQNT*NNY 560
           F+D++K+    ++     ND Q T NNY
Sbjct: 682 FKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 740 TASGLAH*MFNHLRYT*NIYSIFFAKRCLPKRI*G 636
           T SG+   + NH++Y+ N  +I  A    P+R  G
Sbjct: 145 TTSGMFEALCNHIKYSTNKGNIRSAITIFPQRTDG 179


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 598 FLHDVPFDYFWTDP*ILF 651
           F  D  F  FWTDP + F
Sbjct: 57  FTLDFYFRQFWTDPRLAF 74


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 598 FLHDVPFDYFWTDP*ILF 651
           F  D  F  FWTDP + F
Sbjct: 57  FTLDFYFRQFWTDPRLAF 74


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 312 GRKEKKHLEEQREFQKATDLFIAEKNKQ 229
           G+KE  H E Q  F K +  ++ E +++
Sbjct: 274 GKKEFSHYEHQNVFVKNSGQWLREYDRE 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,558
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)