Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o01
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    28   1.8  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   7.5  
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.5  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   7.5  

>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 668 NNGQILPITATKYIDKEVCLRIPPAPLKYIHTLSH 564
           N    LP+ + + +DK    +I P PL  +H  SH
Sbjct: 355 NKEDHLPLLSDEKLDKSAIDKIEPTPLPSVHMNSH 389


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
 Frame = -1

Query: 590  LKYIHTLSHWKPDGRVSV------DLFVRPKDVVRTNPRDVQQRYITIPNIR-APYVSP 435
            L +I     W PD R++       D     +DV R N    +Q++   PNI  AP   P
Sbjct: 969  LSFISDCLKWDPDERMTPQQAAQHDFLTGKQDVRRPNTAPARQKFARPPNIETAPIPRP 1027


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 425 MESVSWDGRQLRAFAEPNKEFWLAKTPQCQVCDETAARLANKKTRN 288
           +  VS D       A PN  FW  K P+ ++C+    + A ++  N
Sbjct: 57  LAGVSIDYVHSLILAYPNDFFWRPKKPRVRICNSWMCQQAAEEQGN 102


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -1

Query: 632 YIDKEVCLRIPPA-PLKYIHTLSHWKPDGRVSVDLFVRPKD----VVRTNPRDVQQRYIT 468
           YI++++ LR+PP    +Y+      +  GR   D++V+ KD    VV  N      + + 
Sbjct: 71  YIEEQIILRLPPGEDCEYVRKAIENREVGR-GADIWVKFKDQRRAVVHVNGHLYAAKLVD 129

Query: 467 IPNI 456
           +P I
Sbjct: 130 LPCI 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,083
Number of Sequences: 5004
Number of extensions: 64767
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)