Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15o01
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   6.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   6.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   6.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   6.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.0  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 722 YCYWTLYYLNKNNVNQKVY 778
           Y Y   Y  N NN N+K+Y
Sbjct: 98  YNYNNKYNYNNNNYNKKLY 116


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 743 YLNKNNVNQKVYLE*NF 793
           Y N NN N+K+Y   N+
Sbjct: 96  YNNNNNYNKKLYYNINY 112


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 740 YYLNKNNVNQKVYLE*NF 793
           Y  N NN N+K+Y   N+
Sbjct: 97  YNYNNNNYNKKLYYNINY 114


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 740 YYLNKNNVNQKVYLE*NF 793
           Y  N NN N+K+Y   N+
Sbjct: 97  YNYNNNNYNKKLYYNINY 114


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 740 YYLNKNNVNQKVYLE*NF 793
           Y  N NN N+K+Y   N+
Sbjct: 97  YNYNNNNYNKKLYYNINY 114


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 740 YYLNKNNVNQKVYLE*NF 793
           Y  N NN N+K+Y   N+
Sbjct: 97  YNYNNNNYNKKLYYNINY 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 743 YLNKNNVNQKVYLE*NF 793
           Y N NN N+K+Y   N+
Sbjct: 334 YNNNNNYNKKLYYNINY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,562
Number of Sequences: 438
Number of extensions: 4781
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)