Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15n19
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    30   0.023
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    28   0.12 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   3.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.0  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 30.3 bits (65), Expect = 0.023
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 10/219 (4%)
 Frame = -1

Query: 709 FLPDTPINLISNNQYQKVPVIIGFNNAEGYLFA--------GKENETTLANFKIYNALPR 554
           FLP  P++L+    ++   ++IG N  EG  F          K+  + L   +    +  
Sbjct: 355 FLPKHPLDLLREADFKDTEILIGNNENEGTYFILYDFNDIFEKDQASFLERERFLGIINN 414

Query: 553 DLIFPTEDEKNETVNRLRGLYSIRRPEDYLKNIAKYEGDTSITYPTIASIGLLSKSMDGL 374
                ++ E+     +      +     Y K +A   GD     P+I     L       
Sbjct: 415 IFKNMSQIEREAITFQYTDWEEVYNGYIYQKMVADVVGDYFFICPSI-HFAQLFADRGMK 473

Query: 373 IYAYKLCYDGWLNIPKWYFGFRKYPGAAHADELFYLF--KVKVPLVMXXXXXXXXXXITM 200
           +Y Y        N+  W     ++ G  H DE+ Y+F   +   L            + +
Sbjct: 474 VYYYFFTQRTSTNL--W----GEWMGVLHGDEVEYVFGHPLNKSLKYSDKERDLSLRMIL 527

Query: 199 LWTNFAKFGNPTPFPSSTLPVTWKPFKTSDPKILVIDKQ 83
            ++ FA  G PT   S      W  +   +PK  + D +
Sbjct: 528 YFSEFAYLGKPTKEDSE-----WPSYSRDEPKYFIFDAE 561


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 709 FLPDTPINLISNNQYQKVPVIIGFNNAEGYLF 614
           FLP  P++L+    ++   ++IG N  EG  F
Sbjct: 355 FLPKHPLDLLREADFKDTEILIGNNENEGTYF 386


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 532 DEKNETVNRLRGLYSIRRPEDYLKNIAKYE 443
           +++  T N++      +RP+D+ +  AKY+
Sbjct: 77  EKQKHTANKVVNYLKTKRPKDWERLSAKYD 106


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 532 DEKNETVNRLRGLYSIRRPEDYLKNIAKYE 443
           +++  T N++      +RP+D+ +  AKY+
Sbjct: 77  EKQKHTANKVVNYLKTKRPKDWERLSAKYD 106


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 360 NCVTTDGSIYRNGILVSVNIP 298
           +CVTT+ S+    +  ++N P
Sbjct: 822 HCVTTEQSVVVTNVTTTINTP 842


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 574 IYNALPRDLIFPTEDEKNETVNRL 503
           + NALP   +  TE+EK +T   L
Sbjct: 525 LLNALPPSSMKETEEEKKKTKQSL 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,467
Number of Sequences: 438
Number of extensions: 5890
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)