Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15n17
         (326 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M69043-1|AAA16489.1|  317|Homo sapiens MAD3 protein.                   28   5.8  
BT007091-1|AAP35754.1|  317|Homo sapiens nuclear factor of kappa...    28   5.8  
BC004983-1|AAH04983.1|  317|Homo sapiens nuclear factor of kappa...    28   5.8  
BC002601-1|AAH02601.1|  317|Homo sapiens nuclear factor of kappa...    28   5.8  
AY496422-1|AAR29599.1|  317|Homo sapiens nuclear factor of kappa...    28   5.8  
AY033600-1|AAK51149.1|  317|Homo sapiens NFKBIA protein.               28   5.8  
AJ249294-1|CAB65556.2|  317|Homo sapiens IkBa protein.                 28   5.8  

>M69043-1|AAA16489.1|  317|Homo sapiens MAD3 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 206
           CTT P +H++L+A +Y  H    L +I  YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198


>BT007091-1|AAP35754.1|  317|Homo sapiens nuclear factor of kappa
           light polypeptide gene enhancer in B-cells inhibitor, a
           protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 206
           CTT P +H++L+A +Y  H    L +I  YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198


>BC004983-1|AAH04983.1|  317|Homo sapiens nuclear factor of kappa
           light polypeptide gene enhancer in B-cells inhibitor, a
           protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 206
           CTT P +H++L+A +Y  H    L +I  YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198


>BC002601-1|AAH02601.1|  317|Homo sapiens nuclear factor of kappa
           light polypeptide gene enhancer in B-cells inhibitor, a
           protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 206
           CTT P +H++L+A +Y  H    L +I  YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198


>AY496422-1|AAR29599.1|  317|Homo sapiens nuclear factor of kappa
           light polypeptide gene enhancer in B-cells inhibitor, a
           protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 206
           CTT P +H++L+A +Y  H    L +I  YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198


>AY033600-1|AAK51149.1|  317|Homo sapiens NFKBIA protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 206
           CTT P +H++L+A +Y  H    L +I  YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198


>AJ249294-1|CAB65556.2|  317|Homo sapiens IkBa protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 206
           CTT P +H++L+A +Y  H    L +I  YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,051,264
Number of Sequences: 237096
Number of extensions: 880863
Number of successful extensions: 1995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)